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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G199270
Reference: TK1151 Chr: Chr07 Coordinates: 50367464-50371627 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

918 bp · TkA07G199270|TK1151|cDNA

ATGGAGGTCAAAATAAAAAAACAAAAGGTTGTTTCTTATGATATTATTCAACGTAGAAAAGAAAAACGTAAAAAAGTTAATCAAAAATATCATGCACAGAAAAGGGACAAACAACAAATAGAAACTGAGCCGTTACAAAATATAGATAACCAACCAAGGCAAAGAACAATACGATATGCAAATAACGCTTCAACATCACGTGGTATTGGACCAATAGACAAAGAAAATATTTCACCTCATAGTAATGGAAATGTTTCTCA...

CDS

Download CDS FASTA

918 bp · TkA07G199270|TK1151|CDS

ATGGAGGTCAAAATAAAAAAACAAAAGGTTGTTTCTTATGATATTATTCAACGTAGAAAAGAAAAACGTAAAAAAGTTAATCAAAAATATCATGCACAGAAAAGGGACAAACAACAAATAGAAACTGAGCCGTTACAAAATATAGATAACCAACCAAGGCAAAGAACAATACGATATGCAAATAACGCTTCAACATCACGTGGTATTGGACCAATAGACAAAGAAAATATTTCACCTCATAGTAATGGAAATGTTTCTCA...

Protein

Download Protein FASTA

305 aa · TkA07G199270|TK1151|PROTEIN

MEVKIKKQKVVSYDIIQRRKEKRKKVNQKYHAQKRDKQQIETEPLQNIDNQPRQRTIRYANNASTSRGIGPIDKENISPHSNGNVSHVQNDFSKECNKMTERNKQRGKNKILFTTGETSITGEHHFIHDEENTEICSPITYETQNEVRDDTEVHLNPINEDDPYDFVYDRVFFIDGPGGTGKTFLYKALLEEVRSRGLIALATASSGAAANNMPGGRTAHSRFKIPINLDNNSMCNIKQQSGVAQLLRLAKIIIWDESSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G199270
TK1151 IDTkA07G199270
OH-1004 IDLXL04_028734
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)33.300
Protein coverage (%)TK1151 99.344 / OH-1004 92.276
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G199270
LocationChr07:50367464-50371627 (+)
DescriptionSimilar to PIF4: ATP-dependent DNA helicase PIF4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028734 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000722 telomere maintenance via recombination Biological Process
GO:0000723 telomere maintenance Biological Process
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0019985 translesion synthesis Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0051276 chromosome organization Biological Process
GO:0071932 replication fork reversal Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
KEGG gene cross-reference
cal:CAALFM_CR07360WA
hsa:80119
prw:PsycPRwf_1560
tbr:Tb11.01.6420
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.825
Rank 1 · TkA07G199270 · TK1151
Cytoplasm0.197
Rank 2 · TkA07G199270 · TK1151
Mitochondrion0.038
Rank 3 · TkA07G199270 · TK1151
Cell membrane0.021
Rank 4 · TkA07G199270 · TK1151
Extracellular0.019
Rank 5 · TkA07G199270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24883NPHP3_N15-38 aa
PF13086AAA_1117-73 aa
PF00005ABC_tran43-54 aa
PF00931NB-ARC104-132 aa
PF00005ABC_tran168-201 aa
PF13604AAA_30169-275 aa
PF13245AAA_19169-299 aa
PF05970PIF1170-304 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G199270PF24883NPHP3_N15380.1313.2
TkA07G199270PF13086AAA_1117731.19.7
TkA07G199270PF00005ABC_tran43542.39.5
TkA07G199270PF00931NB-ARC1041320.09712.9
TkA07G199270PF00005ABC_tran1682012.39.5
TkA07G199270PF13604AAA_301692754.4e-0627.3
TkA07G199270PF13245AAA_191692990.003318.3
TkA07G199270PF05970PIF11703049.7e-53179.7
TkA07G199270PF13401AAA_221702020.01616.2
TkA07G199270PF13191AAA_161702020.05414.7
TkA07G199270PF24883NPHP3_N1701970.1313.2
TkA07G199270PF00931NB-ARC1711920.09712.9
TkA07G199270PF13086AAA_111712131.19.7
TkA07G199270PF00004AAA1761940.1613.1
TkA07G199270PF00005ABC_tran2462582.39.5
TkA07G199270PF13086AAA_112843011.19.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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