TkA07G164330 | RubberDandelionOmics

Gene overview

TkA07G164330

Reference: TK1151 Chr: Chr07 Coordinates: 42212876-42213754 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

801 bp · TkA07G164330|TK1151|cDNA

ATGGAGATAGAAAAAATTGATGAGGGTAAAGGACCCCGTGTATCTGGTGCTTACATCCGTAGCCTTGTGAAACACTTAACTGCCAAAGATCCGGCAGATGGTGGTAGTGGATCGCCGGAAAATGAGAATCAATTCAGCGACGATATTAGTAATAACCAAAAACAGCAAAAGCCCAAAAAACAAGTTAGAAGGAGACTCCACACCAGTAAGCCTTATCAAGAAAGACTCCTAAACATGGCTGAAGCTAGAAGAGAAATTGT...

CDS

Download CDS FASTA

801 bp · TkA07G164330|TK1151|CDS

ATGGAGATAGAAAAAATTGATGAGGGTAAAGGACCCCGTGTATCTGGTGCTTACATCCGTAGCCTTGTGAAACACTTAACTGCCAAAGATCCGGCAGATGGTGGTAGTGGATCGCCGGAAAATGAGAATCAATTCAGCGACGATATTAGTAATAACCAAAAACAGCAAAAGCCCAAAAAACAAGTTAGAAGGAGACTCCACACCAGTAAGCCTTATCAAGAAAGACTCCTAAACATGGCTGAAGCTAGAAGAGAAATTGT...

Protein

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266 aa · TkA07G164330|TK1151|PROTEIN

MEIEKIDEGKGPRVSGAYIRSLVKHLTAKDPADGGSGSPENENQFSDDISNNQKQQKPKKQVRRRLHTSKPYQERLLNMAEARREIVTALKFHRASMKQQQTATAATNHHPLPVQERKPKSTTTTANLYWPITATAPPLPPAYNDNLNLFLPSQTLGLNLNFENFENLDSTCFYNTLHHAMGDEEMEEIRLLGEKHQIEWNDTINLMTSARWCSFLKNMEMEEDEGDEFYGFDQVMEFPIPNWLINGNESSCLQDHNYLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G164330`
TK1151 ID	TkA07G164330
OH-1004 ID	LXL04_028510
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.700
Protein coverage (%)	TK1151 99.624 / OH-1004 94.788 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G164330

Location Chr07:42212876-42213754 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g21280`	Required to regulate responses to abiotic stress (drought) and to oxidative stress leading to cell death.	Oxidative stress provokes distinct transcriptional responses in the stress-tolerant atr7 and stress-sensitive loh2 Arabidopsis thaliana mutants as revealed by multi-parallel quantitative real-time PCR analysis of ROS marker and antioxidant genes.2012 · DOI: 10.1016/j.plaphy.2012.05.024 A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.2020 · DOI: 10.1007/s00018-019-03202-5

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_028510 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010555 response to mannitol Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:1901562 response to paraquat Biological Process

GO:1902882 regulation of response to oxidative stress Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958

Rank 1 · TkA07G164330 · TK1151

Cytoplasm0.125

Rank 2 · TkA07G164330 · TK1151

Cell membrane0.038

Rank 3 · TkA07G164330 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA07G164330 · TK1151

Plastid0.015

Rank 5 · TkA07G164330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30938ATR712-176 aa

PF30938ATR7176-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G164330	`PF30938`	ATR7	12	176	1.5e-83	281.7
TkA07G164330	`PF30938`	ATR7	176	265	1.5e-83	281.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C589`	Arabidopsis thaliana	sp\|Q9C589\|ATR7_ARATH Protein AAL-toxin resistant 7	36.600%	Swiss-Prot	Medium

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