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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G151300
Reference: TK1151 Chr: Chr07 Coordinates: 38917817-38920539 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1102 bp · TkA07G151300|TK1151|cDNA

TTCAGACCCAAATCTCTCCGGTCCTCTTTTCAACGTCACCAAGTCGATAAATTCCCTACAAGCATTTTCCAATCGGTTGATCAAGGCATCAAACAAGAATCGGTTTTTGGATTCCTTTGTTTTCTTCAGGATTGCTTTTCAATTAAGAGCAATCGGAAGACGGAGTTGTTTGGATTTTGATAACTTTAGGTTTTAAGTAAAATTCAGGGGAATTATTTCAGTATTTCGGGGCTGTTTGAACTTGAGCGAAATATGCAGAG...

CDS

Download CDS FASTA

522 bp · TkA07G151300|TK1151|CDS

ATGCAGAGCCAAATAGTTTGCAGTGGTTGTAGGAGCATTTTGCTATATCCAAGAGGAGCCTCGAATGTGTGTTGTGCATTGTGTAACACGGTTACCTCGGTTCCCCCTCCCGGGACAGAAATGGCCCAACTGATCTGTGGAGGTTGTCACACATTGCTTATGTATACGCGTGGTGCTACAAGTGTTAGATGCTCGTGTTGCCATATAGTGAATCTCGCACCAGTTGCAAACCAGCTTGCCCAAGTGAGCTGTGCAAATTG...

Protein

Download Protein FASTA

173 aa · TkA07G151300|TK1151|PROTEIN

MQSQIVCSGCRSILLYPRGASNVCCALCNTVTSVPPPGTEMAQLICGGCHTLLMYTRGATSVRCSCCHIVNLAPVANQLAQVSCANCRTMLMYPYGAPSVKCAVCHYITNVNMNNGRVPIPMQPPGSMPSTSTEMPHFHTQTVVVENPMSVDESGKLVSNVVVGVTTEKKQTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G151300
TK1151 IDTkA07G151300
OH-1004 IDLXL04_002960
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)83.600
Protein coverage (%)TK1151 98.844 / OH-1004 98.333
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G151300
LocationChr07:38917817-38920539 (+)
DescriptionSimilar to LOL3: Protein LOL3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g20380 Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance.
The Arabidopsis LSD1 gene plays an important role in the regulation of low temperature-dependent cell death.2010 · DOI: 10.1111/j.1469-8137.2010.03275.x
At1g32540 Positive regulator of reactive oxygen-induced cell death.
Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins.2003 · DOI: 10.1073/pnas.1130421100

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0611000 Putative zinc finger that may be involved in programmed cell death and defense response. No verified direct reference in this release
Os03g0639600 Putative zinc finger that may be involved in programmed cell death and defense response. No verified direct reference in this release
Os08g0159500 Negative regulator of programmed cell death and hypersensitive response (HR).
OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation.2005 · DOI: 10.1094/mpmi-18-0375
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002960 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000303 response to superoxide Biological Process
GO:0001666 response to hypoxia Biological Process
GO:0002240 response to molecule of oomycetes origin Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway Biological Process
GO:0010104 regulation of ethylene-activated signaling pathway Biological Process
GO:0010310 regulation of hydrogen peroxide metabolic process Biological Process
GO:0010602 regulation of 1-aminocyclopropane-1-carboxylate metabolic process Biological Process
GO:0010618 aerenchyma formation Biological Process
GO:0030154 cell differentiation Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0034051 negative regulation of plant-type hypersensitive response Biological Process
KEGG gene cross-reference
ath:AT1G32540
ath:AT4G20380
dosa:Os03g0639600
dosa:Os08g0159500
dosa:Os12g0611000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.588
Rank 1 · TkA07G151300 · TK1151
Nucleus0.476
Rank 2 · TkA07G151300 · TK1151
Cell membrane0.104
Rank 3 · TkA07G151300 · TK1151
Lysosome / Vacuole0.060
Rank 4 · TkA07G151300 · TK1151
Mitochondrion0.053
Rank 5 · TkA07G151300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23547Zn_ribbon_FGT1_14-36 aa
PF23548Zn_ribbon_FGT1_24-29 aa
PF27353MJ04015-21 aa
PF00130C1_16-30 aa
PF06943zf-LSD17-31 aa
PF02150Zn_ribbon_RPB97-29 aa
PF27353MJ040124-35 aa
PF14522Cytochrome_C741-68 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G151300PF23547Zn_ribbon_FGT1_14367.5e-0935.8
TkA07G151300PF23548Zn_ribbon_FGT1_24290.006916.7
TkA07G151300PF27353MJ04015210.1412.4
TkA07G151300PF00130C1_16300.004617.5
TkA07G151300PF06943zf-LSD17313.2e-38130.0
TkA07G151300PF02150Zn_ribbon_RPB97293.78.2
TkA07G151300PF27353MJ040124350.1412.4
TkA07G151300PF14522Cytochrome_C741688.77.0
TkA07G151300PF23548Zn_ribbon_FGT1_242680.006916.7
TkA07G151300PF23547Zn_ribbon_FGT1_143697.5e-0935.8
TkA07G151300PF00130C1_145690.004617.5
TkA07G151300PF27353MJ040145510.1412.4
TkA07G151300PF06943zf-LSD146703.2e-38130.0
TkA07G151300PF02150Zn_ribbon_RPB946683.78.2
TkA07G151300PF27353MJ040163680.1412.4
TkA07G151300PF23548Zn_ribbon_FGT1_2801060.006916.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P94077Arabidopsis thalianasp|P94077|LSD1_ARATH Protein LSD170.800%Swiss-ProtHigh
Q93ZB1Arabidopsis thalianasp|Q93ZB1|LOL1_ARATH Protein LOL181.800%Swiss-ProtLow
Q2QMB3Oryza sativa subsp. japonicasp|Q2QMB3|LOL2_ORYSJ Protein LOL268.000%Swiss-ProtHigh
Q6ASS2Oryza sativa subsp. japonicasp|Q6ASS2|LOL3_ORYSJ Protein LOL364.700%Swiss-ProtHigh
Q0J7V9Oryza sativa subsp. japonicasp|Q0J7V9|LSD1_ORYSJ Protein LSD179.200%Swiss-ProtLow

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