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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G139440
Reference: TK1151 Chr: Chr07 Coordinates: 36058778-36059230 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

453 bp · TkA07G139440|TK1151|cDNA

ATGGTTATGTCCCTAATTATCTCTCTCTTCCTTATCTTCGTCGGCCTGGCTGCCATCCTCCTACTCCACATCCTCATTTTCGGCTCCTTCCTTCACCGCCGCCGCCGCCAACACGCTACCCCACCACCCACCTCCTCCTCTTACTCTCGCATCGACTTACAGAACAACCTCCCTTCCTTCCGATACTCCACCGCCGCATCTGGTTCTCCTGACTGTTCGATTTGCTTGGAGTGCTTCAGCGAAGGAGACTTGTGCCGAGA...

CDS

Download CDS FASTA

453 bp · TkA07G139440|TK1151|CDS

ATGGTTATGTCCCTAATTATCTCTCTCTTCCTTATCTTCGTCGGCCTGGCTGCCATCCTCCTACTCCACATCCTCATTTTCGGCTCCTTCCTTCACCGCCGCCGCCGCCAACACGCTACCCCACCACCCACCTCCTCCTCTTACTCTCGCATCGACTTACAGAACAACCTCCCTTCCTTCCGATACTCCACCGCCGCATCTGGTTCTCCTGACTGTTCGATTTGCTTGGAGTGCTTCAGCGAAGGAGACTTGTGCCGAGA...

Protein

Download Protein FASTA

150 aa · TkA07G139440|TK1151|PROTEIN

MVMSLIISLFLIFVGLAAILLLHILIFGSFLHRRRRQHATPPPTSSSYSRIDLQNNLPSFRYSTAASGSPDCSICLECFSEGDLCRELPVCNHVFHVHCVDSWLTKVPNCPVCRTTVRLEVDRPSDMIVSDDDYKFLWVVGVGRQGVVNY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G139440
TK1151 IDTkA07G139440
OH-1004 IDLXL04_028287
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 80.214
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G139440
LocationChr07:36058778-36059230 (-)
DescriptionSimilar to ATL56: RING-H2 finger protein ATL56
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18670 RING-H2 finger protein ATL56. No verified direct reference in this release
At4g30370 RING-H2 finger protein ATL14. No verified direct reference in this release
At2g42360 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28, UBC29, UBC30, UBC35 and UBC36 in vitro. No verified direct reference in this release
At2g27940 RING-H2 finger protein ATL57. No verified direct reference in this release
At4g40070 RING-H2 finger protein ATL32. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028287 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0031982 vesicle Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G18670
ath:AT2G42360
ath:AT3G18930
ath:AT4G28890
ath:AT4G30370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.265
Rank 1 · TkA07G139440 · TK1151
Endoplasmic reticulum0.263
Rank 2 · TkA07G139440 · TK1151
Cell membrane0.232
Rank 3 · TkA07G139440 · TK1151
Cytoplasm0.204
Rank 4 · TkA07G139440 · TK1151
Nucleus0.184
Rank 5 · TkA07G139440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03929PepSY_TM12-39 aa
PF13639zf-RING_271-114 aa
PF17123zf-RING_1171-100 aa
PF14634zf-RING_571-115 aa
PF29452FAR1_N71-118 aa
PF13923zf-C3HC4_272-113 aa
PF13445zf-RING_UBOX72-111 aa
PF00097zf-C3HC472-113 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G139440PF03929PepSY_TM12390.2312.0
TkA07G139440PF13639zf-RING_2711149.7e-1245.7
TkA07G139440PF17123zf-RING_11711009.9e-0832.3
TkA07G139440PF14634zf-RING_5711150.0215.5
TkA07G139440PF29452FAR1_N711189.77.0
TkA07G139440PF13923zf-C3HC4_2721132.5e-0524.7
TkA07G139440PF13445zf-RING_UBOX721110.0003521.2
TkA07G139440PF00097zf-C3HC4721130.002418.4
TkA07G139440PF08746zf-RING-like721130.007517.1
TkA07G139440PF12678zf-rbx1741143.2e-0937.6
TkA07G139440PF12861zf-ANAPC11741194.8e-0627.2
TkA07G139440PF13920zf-C3HC4_3741170.2112.1
TkA07G139440PF25403zf-C2H2_ZFAND289930.01316.2
TkA07G139440PF17120zf-RING_16891121.69.1
TkA07G139440PF25403zf-C2H2_ZFAND21061260.01316.2
TkA07G139440PF17123zf-RING_111091169.9e-0832.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZV51Arabidopsis thalianasp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL5646.700%Swiss-ProtMedium
Q9M0C3Arabidopsis thalianasp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL1450.800%Swiss-ProtLow
Q9SLC3Arabidopsis thalianasp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL4147.700%Swiss-ProtLow
Q9SJJ7Arabidopsis thalianasp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL5749.200%Swiss-ProtLow
Q8W571Arabidopsis thalianasp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL3239.500%Swiss-ProtLow

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