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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G131630
Reference: TK1151 Chr: Chr07 Coordinates: 34134785-34144158 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1980 bp · TkA07G131630|TK1151|cDNA

AATCTTTACCAGTTAACTCAAAACCCACAAGAAGAGTCACAAAGGATGATTGCTGTAAGAAAAGTATACCAAAAAGCTATTGTGACTCCTACACATCATGTTGAACAACATTGGAGAGACTATGAGAATTTTGAAAATTCAGTCAGCCGTGCTTTGGCAAAAGGATTGGTATCTGAGTATCAACCAAAATATAACAGTGCAAGGGCTGTTTATAGAGAGAGAAAGAAGTATGTTGATGAAATTGATTGGAATTTGGTTGC...

CDS

Download CDS FASTA

837 bp · TkA07G131630|TK1151|CDS

ATGATTGCTGTAAGAAAAGTATACCAAAAAGCTATTGTGACTCCTACACATCATGTTGAACAACATTGGAGAGACTATGAGAATTTTGAAAATTCAGTCAGCCGTGCTTTGGCAAAAGGATTGGTATCTGAGTATCAACCAAAATATAACAGTGCAAGGGCTGTTTATAGAGAGAGAAAGAAGTATGTTGATGAAATTGATTGGAATTTGGTTGCTGTACCACCTTCTGGTTCTGTTAAGGAAGAACTGCAATGGACAGC...

Protein

Download Protein FASTA

278 aa · TkA07G131630|TK1151|PROTEIN

MIAVRKVYQKAIVTPTHHVEQHWRDYENFENSVSRALAKGLVSEYQPKYNSARAVYRERKKYVDEIDWNLVAVPPSGSVKEELQWTAWKRFLAFEKENPQRIDTVSANKRISFTYEQCLMYLYHYPDIWFDYATWHAKSGSIDSAIKVYQRSLKALPDCAMLMFAYAELEESRGAIQAAKKVYESLLGDGVNATALSHIQFIRFLRRTEGVEAARKHFMDARKSPNCTYHVYVAYATMAFCMDKDAKIAHNVFEAGCRVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G131630
TK1151 IDTkA07G131630
OH-1004 IDLXL04_023493
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)83.800
Protein coverage (%)TK1151 28.777 / OH-1004 84.615
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G131630
LocationChr07:34134785-34144158 (+)
DescriptionSimilar to CSTF77: Cleavage stimulation factor subunit 77
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17760 One of the multiple factors required for polyadenylation and 3'-end cleavage of pre-mRNAs (By similarity).
Targeted 3' processing of antisense transcripts triggers Arabidopsis FLC chromatin silencing.2010 · DOI: 10.1126/science.1180278

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023493 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009553 embryo sac development Biological Process
GO:0016441 post-transcriptional gene silencing Biological Process
GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process
GO:0031123 RNA 3'-end processing Biological Process
GO:0031124 mRNA 3'-end processing Biological Process
GO:0031440 regulation of mRNA 3'-end processing Biological Process
GO:0042868 antisense RNA metabolic process Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G17760
hsa:1479
mmu:228410
pon:100174283
spo:2541600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.805
Rank 1 · TkA07G131630 · TK1151
Cytoplasm0.219
Rank 2 · TkA07G131630 · TK1151
Mitochondrion0.032
Rank 3 · TkA07G131630 · TK1151
Cell membrane0.021
Rank 4 · TkA07G131630 · TK1151
Endoplasmic reticulum0.013
Rank 5 · TkA07G131630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05843Suf3-258 aa
PF23240HAT_PRP39_N3-27 aa
PF23233HAT_Syf1_CNRKL1_N4-31 aa
PF23231HAT_Syf1_CNRKL1_C15-29 aa
PF23241HAT_PRP39_C20-32 aa
PF24575TPR_Slam31-58 aa
PF13432TPR_1636-74 aa
PF13428TPR_1444-64 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G131630PF05843Suf32581e-81275.8
TkA07G131630PF23240HAT_PRP39_N3273.9e-0834.3
TkA07G131630PF23233HAT_Syf1_CNRKL1_N4311e-1042.4
TkA07G131630PF23231HAT_Syf1_CNRKL1_C15290.001218.4
TkA07G131630PF23241HAT_PRP39_C20324.8e-2279.2
TkA07G131630PF24575TPR_Slam31580.02415.7
TkA07G131630PF13432TPR_1636746.5e-0627.2
TkA07G131630PF13428TPR_1444643.1e-0937.3
TkA07G131630PF07719TPR_248580.001319.4
TkA07G131630PF13181TPR_848580.212.6
TkA07G131630PF31146MIT_ATG3848660.2112.5
TkA07G131630PF23241HAT_PRP39_C812074.8e-2279.2
TkA07G131630PF23240HAT_PRP39_N851543.9e-0834.3
TkA07G131630PF23233HAT_Syf1_CNRKL1_N861841e-1042.4
TkA07G131630PF09351DUF1993941340.06913.9
TkA07G131630PF30153TPR_YpiA_C1141580.01516.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUP1Arabidopsis thalianasp|Q8GUP1|CTF77_ARATH Cleavage stimulation factor subunit 7766.100%Swiss-ProtHigh

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