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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G123290
Reference: TK1151 Chr: Chr07 Coordinates: 31970319-31973000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1495 bp · TkA07G123290|TK1151|cDNA

GTAAGATGTGGCAAGTGAGCATCCTCAAAAGAAATTTCTTTTGTTCTAAAAAGAACATTTCTCTCTTCCCTTGGTCACTTCATCACCACACAAACCTCAACGAAACAAAAATCCATGAAACAAAAACAAGAAGTTTCATCACTCTTCTTCTCCATCATGAAATTACCTTTATATATAGGCCTCTTCGTGTACATTCGACGGCAATTCAACAAAAGAAAACCAGATAAAGATCCATAAATTCATCAAAAAATGGCCTCAAT...

CDS

Download CDS FASTA

1035 bp · TkA07G123290|TK1151|CDS

ATGGCCTCAATCTCCTCTTCCTCTGTAAACCATTTACTCAGCCCTATTCATCATCGTACCTTATTAGTTCCTAAATCCCTTTCTTCTTTCAAGTATTCCCAGTTTAATTCTCCCATCCGATACCCATTTTCAAGAATTCAAGCGACTTCTGACCTCGTTGCTACAGTATCGGAAGCAATCACTCAACTCCAAGATTTGGGAGAGCACGATTTGTTTGCATGTCCTGTGTGTTTCGAGCCACTTATAAGAAAAGGTCCTCC...

Protein

Download Protein FASTA

344 aa · TkA07G123290|TK1151|PROTEIN

MASISSSSVNHLLSPIHHRTLLVPKSLSSFKYSQFNSPIRYPFSRIQATSDLVATVSEAITQLQDLGEHDLFACPVCFEPLIRKGPPGFNLPAIYRSGFKCRKCNKTYSSKNIYLDLTVIAGAKDYVEIQPSRTELFRSPLVSFLYERGWRQNFNLSGFPGPDDEFDMAQEYFKPAEGGILVDVSCGSGLFSRKFAKSGIYSKVVALDFSENMLRQCYDFIKLDDTISSSNLALVRADVSRLPFASGSIDAVHAGAALHC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G123290
TK1151 IDTkA07G123290
OH-1004 IDLXL04_028135
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 99.709 / OH-1004 99.709
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G123290
LocationChr07:31970319-31973000 (-)
DescriptionSimilar to At2g41040: Uncharacterized methyltransferase At2g41040, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41040 Uncharacterized methyltransferase At2g41040, chloroplastic. No verified direct reference in this release
At1g78140 Uncharacterized methyltransferase At1g78140, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028135 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009234 menaquinone biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0010287 plastoglobule Cellular Component
GO:0008168 methyltransferase activity Molecular Function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function
GO:0043770 demethylmenaquinone methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G78140
ath:AT2G41040
dsy:DSY1907
sab:SAB1333c
sam:MW1360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.975
Rank 1 · TkA07G123290 · TK1151
Mitochondrion0.030
Rank 2 · TkA07G123290 · TK1151
Nucleus0.024
Rank 3 · TkA07G123290 · TK1151
Cytoplasm0.020
Rank 4 · TkA07G123290 · TK1151
Peroxisome0.014
Rank 5 · TkA07G123290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25164CoiA_N61-84 aa
PF13894zf-C2H2_472-80 aa
PF00096zf-C2H272-83 aa
PF23783Zn_ribbon_TiaS74-77 aa
PF01728FtsJ96-117 aa
PF25164CoiA_N97-106 aa
PF23783Zn_ribbon_TiaS97-111 aa
PF22995C2CH-3rd_BIRD-IDD99-108 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G123290PF25164CoiA_N61840.2711.5
TkA07G123290PF13894zf-C2H2_472800.7311.4
TkA07G123290PF00096zf-C2H272838.57.8
TkA07G123290PF23783Zn_ribbon_TiaS74770.610.6
TkA07G123290PF01728FtsJ961170.2412.0
TkA07G123290PF25164CoiA_N971060.2711.5
TkA07G123290PF23783Zn_ribbon_TiaS971110.610.6
TkA07G123290PF22995C2CH-3rd_BIRD-IDD991080.3811.2
TkA07G123290PF13894zf-C2H2_4991120.7311.4
TkA07G123290PF00096zf-C2H2991118.57.8
TkA07G123290PF01728FtsJ1702470.2412.0
TkA07G123290PF01209Ubie_methyltran1752884e-1143.4
TkA07G123290PF13489Methyltransf_231753284e-1143.6
TkA07G123290PF24675NpmA1782450.2211.5
TkA07G123290PF09445Methyltransf_151802400.08913.1
TkA07G123290PF02390Methyltransf_41802390.1312.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WPT7Arabidopsis thalianasp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic65.300%Swiss-ProtHigh
Q8LBV4Arabidopsis thalianasp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic53.500%Swiss-ProtHigh

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