Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4349 bp · TkA07G117470|TK1151|cDNA
GGTACTTAAATGCAATAAATAAAACACAAGCAGCTCCCGCAGACAAAAGCAGTCATATCATTTGAACCGGGGATGTAACTGACGACTGTCCGATCCCGATTGCGGTCAAAATCAGCTCAGCGGAGAATCGGGCCGGCGACAATGTCGTCGATTCAACGGCCACCAAACGACTCCTGGGACTACATGCTACCGGGTCCACCTTCACGCAACAACGGCGGATCTGCTGACCTCCGTTCGACCGGACTTCTTGCCTATGCCGC...
3963 bp · TkA07G117470|TK1151|CDS
ATGTCGTCGATTCAACGGCCACCAAACGACTCCTGGGACTACATGCTACCGGGTCCACCTTCACGCAACAACGGCGGATCTGCTGACCTCCGTTCGACCGGACTTCTTGCCTATGCCGCCGGCAGCAGTGTCGCTATAGTCGACTCACGCTCCATGCAACTCGTATCAGTCCTCCCGATTCCTCCTCCATACGCCAGCAGTGCAAATTCTACCACAAGTTCTTCAACGTCTTCCTATTTGTCTCCCTTTGTCACCGCCGT...
Protein
Download Protein FASTA1320 aa · TkA07G117470|TK1151|PROTEIN
MSSIQRPPNDSWDYMLPGPPSRNNGGSADLRSTGLLAYAAGSSVAIVDSRSMQLVSVLPIPPPYASSANSTTSSSTSSYLSPFVTAVRWCPTPLRLDLLSHDPTSSHSHLLLAAGDRQGRVCLLDPRVKSSAPLFLQTDPNSKLGIQDLCWIQARPDSWIIAAITGSSLLSLFETSTGRCFFKYDAAPEIFSSIKRDPFDSRHFCVVGLRGFLLAVKVHGDNSESDVVLKELQIPTDASELNKLERDAAAANASGSTNNS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G117470 |
|---|---|
| TK1151 ID | TkA07G117470 |
| OH-1004 ID | LXL04_028068 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G117470 |
|---|---|
| Location | Chr07:30510783-30516958 (+) |
| Description | Similar to WDR11: WD repeat-containing protein 11 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006886 intracellular protein transport Biological Process GO:0008589 regulation of smoothened signaling pathway Biological Process GO:0035264 multicellular organism growth Biological Process GO:0060271 cilium assembly Biological Process GO:0099041 vesicle tethering to Golgi Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005802 trans-Golgi network Cellular Component GO:0005814 centriole Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component |
| KEGG gene cross-reference | dre:558865 hsa:55717 mmu:207425 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23751Beta-prop_WDR11_1st18-500 aaPF24807WD40_CDC20-Fz32-61 aaPF29630ASA1102-125 aaPF24807WD40_CDC20-Fz107-185 aaPF23098Beta-prop_NOL10_N107-134 aaPF23381Beta-prop_IFT122_1st111-181 aaPF12894ANAPC4_WD40134-189 aaPF25175Beta-prop_WDR5142-182 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G117470 | PF23751 | Beta-prop_WDR11_1st | 18 | 500 | 1.5e-229 | 763.2 |
| TkA07G117470 | PF24807 | WD40_CDC20-Fz | 32 | 61 | 3.8e-10 | 40.3 |
| TkA07G117470 | PF29630 | ASA1 | 102 | 125 | 0.0033 | 17.1 |
| TkA07G117470 | PF24807 | WD40_CDC20-Fz | 107 | 185 | 3.8e-10 | 40.3 |
| TkA07G117470 | PF23098 | Beta-prop_NOL10_N | 107 | 134 | 0.069 | 13.0 |
| TkA07G117470 | PF23381 | Beta-prop_IFT122_1st | 111 | 181 | 2.7e-05 | 24.4 |
| TkA07G117470 | PF12894 | ANAPC4_WD40 | 134 | 189 | 0.0006 | 20.7 |
| TkA07G117470 | PF25175 | Beta-prop_WDR5 | 142 | 182 | 2.6e-06 | 27.7 |
| TkA07G117470 | PF24814 | WD40_Prp19 | 150 | 185 | 0.002 | 17.9 |
| TkA07G117470 | PF25174 | Beta-prop_THOC3 | 151 | 183 | 0.00097 | 18.9 |
| TkA07G117470 | PF25173 | Beta-prop_WDR3_1st | 253 | 288 | 1.3e-06 | 28.9 |
| TkA07G117470 | PF25175 | Beta-prop_WDR5 | 263 | 461 | 2.6e-06 | 27.7 |
| TkA07G117470 | PF25174 | Beta-prop_THOC3 | 265 | 348 | 0.00097 | 18.9 |
| TkA07G117470 | PF23775 | Beta-prop_RIG_2nd | 265 | 297 | 0.12 | 12.5 |
| TkA07G117470 | PF23381 | Beta-prop_IFT122_1st | 270 | 352 | 2.7e-05 | 24.4 |
| TkA07G117470 | PF25171 | Beta-prop_WDR36-Utp21_1st | 279 | 439 | 0.00031 | 21.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.