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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G092920
Reference: TK1151 Chr: Chr07 Coordinates: 24173822-24178286 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1686 bp · TkA07G092920|TK1151|cDNA

ACAGCAACTAAAATGATTGGTGGTTGTAATGTTGTAGACCGCCTCAATACCTTTCCATATACGTAGTTTCACGGCGGTTCCTCTTCTCATCCCTTGAAAACCGATGGACCCGAGCATCTCCACCGCCGGATCACCACCGCCCAACAAGAGGAGAAATGTCTTTTCTACCACAAAAATTTCTGCCTTCAGTGACGACATTATTTCTGCGGTTTTATCGTTCCTCGATCTCGTCCATCTAATTCGCTGCACCGCCGTCTGCA...

CDS

Download CDS FASTA

1305 bp · TkA07G092920|TK1151|CDS

ATGGACCCGAGCATCTCCACCGCCGGATCACCACCGCCCAACAAGAGGAGAAATGTCTTTTCTACCACAAAAATTTCTGCCTTCAGTGACGACATTATTTCTGCGGTTTTATCGTTCCTCGATCTCGTCCATCTAATTCGCTGCACCGCCGTCTGCAAGTCATGGAGACAAGTCATTGATAAATCAAAGCTACTCCAAACTTTGTATTACAAACAAAAAGGGATTCCTGGTGGTGATTTTGACAAATCTACCCCTTCAGA...

Protein

Download Protein FASTA

434 aa · TkA07G092920|TK1151|PROTEIN

MDPSISTAGSPPPNKRRNVFSTTKISAFSDDIISAVLSFLDLVHLIRCTAVCKSWRQVIDKSKLLQTLYYKQKGIPGGDFDKSTPSEGIWRRLQALAISQHRSSLRTGSIDIYQWKGHSDGIDKCKMKMGLLLTGGSGKVMRLWSVERYKCLAEYDLPHIGSLIDFNFDESKVVGLVGNHICLWRRNERKNIFSSQGGQFPRSSCMCYVDPEAVVGCDDGRARIFDMYGRKWARIIKMHDGPITCLSLSDDHLLIGGSSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G092920
TK1151 IDTkA07G092920
OH-1004 IDLXL04_027766
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G092920
LocationChr07:24173822-24178286 (-)
DescriptionSimilar to At3g52030: F-box/WD-40 repeat-containing protein At3g52030
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52030 F-box/WD-40 repeat-containing protein At3g52030. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027766 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000266 mitochondrial fission Biological Process
GO:0006281 DNA repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007219 Notch signaling pathway Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0010992 ubiquitin recycling Biological Process
GO:0016559 peroxisome fission Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0031398 positive regulation of protein ubiquitination Biological Process
GO:0031648 protein destabilization Biological Process
KEGG gene cross-reference
ath:AT3G52030
rno:100360914
ssl:SS1G_08568
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.871
Rank 1 · TkA07G092920 · TK1151
Cytoplasm0.162
Rank 2 · TkA07G092920 · TK1151
Mitochondrion0.029
Rank 3 · TkA07G092920 · TK1151
Cell membrane0.028
Rank 4 · TkA07G092920 · TK1151
Plastid0.013
Rank 5 · TkA07G092920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box26-65 aa
PF12937F-box-like30-69 aa
PF25173Beta-prop_WDR3_1st112-168 aa
PF23381Beta-prop_IFT122_1st113-250 aa
PF00400WD40113-145 aa
PF25174Beta-prop_THOC3114-172 aa
PF24814WD40_Prp19115-336 aa
PF25047Beta-prop_TEP1_2nd115-244 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G092920PF00646F-box26657.9e-0832.6
TkA07G092920PF12937F-box-like30692.6e-0731.0
TkA07G092920PF25173Beta-prop_WDR3_1st1121684.5e-1453.3
TkA07G092920PF23381Beta-prop_IFT122_1st1132509.1e-1348.9
TkA07G092920PF00400WD401131451.7e-0629.1
TkA07G092920PF25174Beta-prop_THOC31141723.2e-1350.0
TkA07G092920PF24814WD40_Prp191153363.2e-0937.0
TkA07G092920PF25047Beta-prop_TEP1_2nd1152445.8e-0832.9
TkA07G092920PF25175Beta-prop_WDR51162872.1e-1454.2
TkA07G092920PF25048Beta-prop_TEP1_C1181530.06613.9
TkA07G092920PF24807WD40_CDC20-Fz1211561.9e-1557.7
TkA07G092920PF24805EIF3I1222692.9e-0627.4
TkA07G092920PF24782WD40_MABP1-WDR62_2nd1272510.003617.0
TkA07G092920PF23419WD40_RFWD31281580.03614.1
TkA07G092920PF25168Beta-prop_WDR36-Utp21_2nd1291600.002118.1
TkA07G092920PF24796WDR551302594.9e-1246.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SV01Arabidopsis thalianasp|Q9SV01|FBW4_ARATH F-box/WD-40 repeat-containing protein At3g5203045.400%Swiss-ProtMedium

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