TkA07G087410 | RubberDandelionOmics

Gene overview

TkA07G087410

Reference: TK1151 Chr: Chr07 Coordinates: 22813033-22815672 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1443 bp · TkA07G087410|TK1151|cDNA

TAAAAACCTGTCATTCATGTCCCAACTTCTTTCTTCAATTACAATAAACTCATATTTAGATATATTTCGAATTTCAATCTTCAAAACTGCATCATTTCTTCCTTTGGAACACGATCTTACGATGAAGTTTAAGATATGCAGGCCCACGATAAACTTATCAGCTTGCACTGCCATCACTATATGAATTTTGGAGATTATGGACGAAGTATTAGGGCAATATCAGGTTATCAGGGAGACATTCGTTTATTGGCATGCCGTCC...

CDS

Download CDS FASTA

1188 bp · TkA07G087410|TK1151|CDS

ATGTCCCAACTTCTTTCTTCAATTACAATAAACTCATATTTAGATATATTTCGAATTTCAATCTTCAAAACTGCATCATTTCTTCCTTTGGAACACGATCTTACGATGAAGTTTAAGATATGCAGGCCCACGATAAACTTATCAGCTTGCACTGCCGTCAAACACACCTCATCGAGCAGCTCACTGGAAATCGACGTTCGTGAAGAGTACGCCAATGCTTTCAGAACACAATCATACATAGACTTCTGGACTCGAGTTCT...

Protein

Download Protein FASTA

395 aa · TkA07G087410|TK1151|PROTEIN

MSQLLSSITINSYLDIFRISIFKTASFLPLEHDLTMKFKICRPTINLSACTAVKHTSSSSSLEIDVREEYANAFRTQSYIDFWTRVLDSTHGPSTINKTLSSVTAARLPSYRLFAENLLDPDQPTVTRILAMANHHSTDQTLLSDYFIETANASIVCGSLLQDVDRLRSNYRSLKTVMMDTTKVSFASNCLTVQSRLVDFSNSVNPFTVPKSSQGVQAVQLACFKVLKRLESSRDMAQLKLQRINNIKHGSAVTLVALTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G087410`
TK1151 ID	TkA07G087410
OH-1004 ID	LXL04_022303
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	31.200
Protein coverage (%)	TK1151 83.544 / OH-1004 90.141 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G087410

Location Chr07:22813033-22815672 (-)

Description Similar to At1g20180: UPF0496 protein At1g20180

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g49070`	UPF0496 protein At3g49070.	No verified direct reference in this release
`At1g20180`	UPF0496 protein At1g20180.	No verified direct reference in this release
`At3g19330`	UPF0496 protein At3g19330.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XCJ1`	UPF0496 protein 3.	No verified direct reference in this release
`Os03g0148000`	UPF0496 protein 3.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022303 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G20180

ath:AT3G19330

ath:AT3G49070

dosa:Os03g0148000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.338

Rank 1 · TkA07G087410 · TK1151

Nucleus0.303

Rank 2 · TkA07G087410 · TK1151

Cell membrane0.257

Rank 3 · TkA07G087410 · TK1151

Endoplasmic reticulum0.139

Rank 4 · TkA07G087410 · TK1151

Mitochondrion0.106

Rank 5 · TkA07G087410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00518E640-57 aa

PF05055DUF677103-392 aa

PF00518E6156-235 aa

PF19071DUF5767162-209 aa

PF12648TcpE238-310 aa

PF23323Spectrin_6310-374 aa

PF19071DUF5767349-349 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G087410	`PF00518`	E6	40	57	0.027	15.6
TkA07G087410	`PF05055`	DUF677	103	392	9.2e-12	45.2
TkA07G087410	`PF00518`	E6	156	235	0.027	15.6
TkA07G087410	`PF19071`	DUF5767	162	209	0.054	14.0
TkA07G087410	`PF12648`	TcpE	238	310	0.034	15.3
TkA07G087410	`PF23323`	Spectrin_6	310	374	0.064	14.1
TkA07G087410	`PF19071`	DUF5767	349	349	0.054	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SMU4`	Arabidopsis thaliana	sp\|Q9SMU4\|U496N_ARATH UPF0496 protein At3g49070	49.300%	Swiss-Prot	Medium
`Q6DYE5`	Arabidopsis thaliana	sp\|Q6DYE5\|U496K_ARATH UPF0496 protein At1g20180	32.300%	Swiss-Prot	Medium
`Q9LT84`	Arabidopsis thaliana	sp\|Q9LT84\|U496M_ARATH UPF0496 protein At3g19330	30.300%	Swiss-Prot	Medium
`A2XCJ1`	Oryza sativa subsp. indica	sp\|A2XCJ1\|U496C_ORYSI UPF0496 protein 3	41.100%	Swiss-Prot	Medium
`Q10RR9`	Oryza sativa subsp. japonica	sp\|Q10RR9\|U496C_ORYSJ UPF0496 protein 3	40.900%	Swiss-Prot	Medium

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