TkA07G082980 | RubberDandelionOmics

Gene overview

TkA07G082980

Reference: TK1151 Chr: Chr07 Coordinates: 21695383-21697010 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

806 bp · TkA07G082980|TK1151|cDNA

ATGTCCTTTTGTAAACAAGTCCGTTTTAAGTTTGTAATGTATTTGACTTCTTTGACCTACGTAATTCTTGTGAATACGTCTGCAAGTAATATCAAGTTACTTTCTCAATTGTCGAATCTTCTGATTTACTATTTCCATCCTTAAACAACTCCACAGATATAATTCCAATCCATCTCTCCGTTAAATGTATTGATCTATAATTCTCGTACTGGCATTTTGGTGGTTGACTGAATCTGAAAGATTTTGTTCACAATTGGATC...

CDS

Download CDS FASTA

888 bp · TkA07G082980|TK1151|CDS

ATGGGAAAATCATTGAAGCGACCAGGATTCCGTTTTAAACCTACTGATGTTGAATTGGCTATGTATTACCTCAAGAAAAAGTTACTAAACATAAAGCTTGACCCCGAAGTTATTGCAGAAATTAATATAAACGACTTCAGCCCATGGGATCTTCCAGCCAAATCCATCTTAAGTGGTGATCTAGAATGGTACTTTTTTTCCCCAAAACCTAAAAAGTACTTAAGTGGGCCCAGAATGAACCGGGCAACTAAAACCGGTCA...

Protein

Download Protein FASTA

295 aa · TkA07G082980|TK1151|PROTEIN

MGKSLKRPGFRFKPTDVELAMYYLKKKLLNIKLDPEVIAEININDFSPWDLPAKSILSGDLEWYFFSPKPKKYLSGPRMNRATKTGHWKGTGKDKEVKHKGKTVAMRKTLIFYMGHPPKWTRTNWVMHEYRMKDEDLANQGVSQDAYMVCRVFEKSDVGPKNGAQYGGQFDDDDEGSSVTSVMMVGVLVNPNNASTSGAGPSTITSLENEKPTDVLVNDDVMLTRGDLSSIRNKDTQKAYKEVEDGKGKKVMSDDGIDIF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G082980`
TK1151 ID	TkA07G082980
OH-1004 ID	LXL04_027647
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G082980

Location Chr07:21695383-21697010 (+)

Description Similar to NAC078: NAC domain-containing protein 78

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04410`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity).	No verified direct reference in this release
`At3g10500`	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP).	A NAC transcription factor NTL4 promotes reactive oxygen species production during drought-induced leaf senescence in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.04932.x The Arabidopsis NAC transcription factor NTL4 participates in a positive feedback loop that induces programmed cell death under heat stress conditions.2014 · DOI: 10.1016/j.plantsci.2014.07.003
`At5g09330`	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes.	No verified direct reference in this release
`At3g03200`	Transcription factor directing sieve element enucleation and cytosol degradation.	No verified direct reference in this release
`At3g10480`	Transcriptional repressor that binds to the motif 5'- (C/T)A(C/A)G-3' in the promoter of target genes.	Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14.2015 · DOI: 10.1093/nar/gku1382 C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.2015 · DOI: 10.1038/celldisc.2015.3

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0119966`	Transcription factor that functions as a regulator of the jasmonate (JA) signaling pathway.	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus.2009 · DOI: 10.1111/j.1365-313x.2008.03712.x The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.2010 · DOI: 10.1111/j.1365-313x.2009.04107.x

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027647 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0002237 response to molecule of bacterial origin Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009555 pollen development Biological Process

GO:0009644 response to high light intensity Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009819 drought recovery Biological Process

GO:0009908 flower development Biological Process

GO:0009962 regulation of flavonoid biosynthetic process Biological Process

GO:0010150 leaf senescence Biological Process

KEGG gene cross-reference

ath:AT3G10490

ath:AT3G10500

ath:AT5G04410

ath:AT5G09330

dosa:Os03g0119966

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964

Rank 1 · TkA07G082980 · TK1151

Cytoplasm0.090

Rank 2 · TkA07G082980 · TK1151

Cell membrane0.036

Rank 3 · TkA07G082980 · TK1151

Endoplasmic reticulum0.029

Rank 4 · TkA07G082980 · TK1151

Plastid0.012

Rank 5 · TkA07G082980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365NAM8-132 aa

PF29201VOZ_C46-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G082980	`PF02365`	NAM	8	132	4.7e-40	137.6
TkA07G082980	`PF29201`	VOZ_C	46	137	0.019	15.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84K00`	Arabidopsis thaliana	sp\|Q84K00\|NAC78_ARATH NAC domain-containing protein 78	54.900%	Swiss-Prot	Medium
`Q949N0`	Arabidopsis thaliana	sp\|Q949N0\|NAC53_ARATH NAC domain-containing protein 53	54.900%	Swiss-Prot	Medium
`Q9FY82`	Arabidopsis thaliana	sp\|Q9FY82\|NAC82_ARATH NAC domain-containing protein 82	52.600%	Swiss-Prot	Medium
`A4VCM0`	Arabidopsis thaliana	sp\|A4VCM0\|NAC45_ARATH NAC domain-containing protein 45	52.000%	Swiss-Prot	Medium
`Q9SQX9`	Arabidopsis thaliana	sp\|Q9SQX9\|NAC50_ARATH NAC domain containing protein 50	48.300%	Swiss-Prot	Low
`Q8H045`	Oryza sativa subsp. japonica	sp\|Q8H045\|NAC54_ORYSJ NAC domain-containing protein 54	52.200%	Swiss-Prot	Medium

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