TkA07G081110 | RubberDandelionOmics

Gene overview

TkA07G081110

Reference: TK1151 Chr: Chr07 Coordinates: 21210275-21212313 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1252 bp · TkA07G081110|TK1151|cDNA

ATATCATAATGGATATCGTTACCAATACGTTTCCCTTGAAATTTACACCGACTATGTACTACGCGTTATATTGCCACGTCTTCGTCGACAAACCCTCCCTGGATACATGTCGCGATCACAGCGTCGAATCATGAGTGAGCCAACAAAATCAAAAAAGTTAAAGAGCAAATGCAAACCCAACGCTATAATTATATTCTGCTACTAGTAGTAGCATCGTCGTTGTTGAATCCATCATTAGCAAGCATACAATCCAGTTTTTG...

CDS

Download CDS FASTA

678 bp · TkA07G081110|TK1151|CDS

ATGCAAACCCAACGCTATAATTATATTCTGCTACTAGTAGTAGCATCGTCGTTGTTGAATCCATCATTAGCAAGCATACAATCCAGTTTTTGCAGCAGCCAAGAAGATTTTCTGGAGTCGAATCCAATGGCAACTCTTGGGGGTGTAAAGGATTCACCGGCTTCCAACAGCGCCGAGATCGATGGTCTCGCTCGTTTTGCCGTCGAAGAGCATAACAAGAAAGAGAATAAAATGCTGGAGTTAGCAAGGGTGGTAAAGGT...

Protein

Download Protein FASTA

225 aa · TkA07G081110|TK1151|PROTEIN

MQTQRYNYILLLVVASSLLNPSLASIQSSFCSSQEDFLESNPMATLGGVKDSPASNSAEIDGLARFAVEEHNKKENKMLELARVVKVQEQVVAGTLHHLTLEVLDAGEKKTYHAKIWVKPWMNFKELQEFTHITEPNGESVAVHDDVQDAANHVLKTLQQRSNSLFPYELQEVVHVKAESVDGSAKYDLLLKVKRSDKEEKFKANVHKDKDGVFHVNNMVQDHSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G081110`
TK1151 ID	TkA07G081110
OH-1004 ID	LXL04_023125
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	55.400
Protein coverage (%)	TK1151 40.444 / OH-1004 94.845 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G081110

Location Chr07:21210275-21212313 (+)

Description Similar to Cysteine proteinase inhibitor A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g12490`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At5g05110`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`At2g40880`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0270100`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0006972 hyperosmotic response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004869 cysteine-type endopeptidase inhibitor activity Molecular Function

GO:0050897 cobalt ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G40880

ath:AT3G12490

dosa:Os01g0803200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.378

Rank 1 · TkA07G081110 · TK1151

Cytoplasm0.298

Rank 2 · TkA07G081110 · TK1151

Endoplasmic reticulum0.183

Rank 3 · TkA07G081110 · TK1151

Lysosome / Vacuole0.172

Rank 4 · TkA07G081110 · TK1151

Nucleus0.117

Rank 5 · TkA07G081110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00031Cystatin47-131 aa

PF16845SQAPI58-132 aa

PF20956DUF4931_C104-178 aa

PF00031Cystatin145-203 aa

PF16845SQAPI145-207 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G081110	`PF00031`	Cystatin	47	131	6.4e-22	78.3
TkA07G081110	`PF16845`	SQAPI	58	132	7.7e-21	75.0
TkA07G081110	`PF20956`	DUF4931_C	104	178	0.027	15.2
TkA07G081110	`PF00031`	Cystatin	145	203	6.4e-22	78.3
TkA07G081110	`PF16845`	SQAPI	145	207	7.7e-21	75.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8H0X6`	Arabidopsis thaliana	sp\|Q8H0X6\|CYT6_ARATH Cysteine proteinase inhibitor 6	51.900%	Swiss-Prot	High
`Q8LC76`	Arabidopsis thaliana	sp\|Q8LC76\|CYT7_ARATH Cysteine proteinase inhibitor 7	50.800%	Swiss-Prot	High
`Q41906`	Arabidopsis thaliana	sp\|Q41906\|CYT3_ARATH Cysteine proteinase inhibitor 3	55.700%	Swiss-Prot	Low
`Q0JNR2`	Oryza sativa subsp. japonica	sp\|Q0JNR2\|CYT12_ORYSJ Cysteine proteinase inhibitor 12	58.900%	Swiss-Prot	High

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