Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2288 bp · TkA07G064620|TK1151|cDNA
GATACTCGTAGGTTTCCTGGTAGAGTGTGGCAACATGAACTAAATGTGTAACTTAATAACACGCAAAAACAAATTTACATCGATTTATTTTCAAACAAAAGAAAGAAGATACTCATAGTCTCCATTGCATGAAACGATCTCACATATCCCAACAAAGACCACAGCCTTAAACCCAAATTACAACATTTTCAAGATCAACAATACGAATTCAATCTGAAATCCCGCTGCCATTAGCCCTAATTCACTAAAACTTTAGCACA...
1647 bp · TkA07G064620|TK1151|CDS
ATGATGAGGTGGGAGAAATTGGAGATACAAAGAGGAGGGCCGGGGAAGAGATGGGGCCATACGTGCAACGCGGTTCGTGGTGGTCAGCTGCTCTACATCTTCGGTGGTTACGGCGAAGACAACGCCCAGACTAATAAAGTTCACGTCTACGACACCACTGCAAGGACATGGAGTGAACCTGATATGCAAGGCACACTACCTGTTCCCAGAGACAGCCACAGCTGCACCACTGTAGGAGACAAGTTGTTTGTATTTGGTGG...
Protein
Download Protein FASTA548 aa · TkA07G064620|TK1151|PROTEIN
MMRWEKLEIQRGGPGKRWGHTCNAVRGGQLLYIFGGYGEDNAQTNKVHVYDTTARTWSEPDMQGTLPVPRDSHSCTTVGDKLFVFGGTDGNIPLKDLHILDTTTNTWMTPYVRGEGPEPREGHSAALIGKRLFIFGGCGKSFDTPVEEYFDDLYILNTETMVWKRVATTGIPPAKRNSHTCVSWKNKIIVIGGEDTQNYYMSDVQMLDTDTLSWTKLVTNGELLPPRAGHTTIALGKNLFVFGGFTDAEDLYDDLYMFDL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA07G064620 |
|---|---|
| TK1151 ID | TkA07G064620 |
| OH-1004 ID | LXL04_008713 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA07G064620 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:17066460-17069724 (-) | |||||||||
| Description | Similar to Klhdc3: Kelch domain-containing protein 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0016567 protein ubiquitination Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0140627 ubiquitin-dependent protein catabolic process via the C-end degron rule pathway Biological Process GO:0000785 chromatin Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0031462 Cul2-RING ubiquitin ligase complex Cellular Component GO:0003682 chromatin binding Molecular Function GO:1990756 ubiquitin-like ligase-substrate adaptor activity Molecular Function | |||||||||
| KEGG gene cross-reference | mmu:71765 rno:363192 xla:447194 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24681Kelch_KLHDC2_KLHL20_DRC72-193 aaPF24981Beta-prop_ATRN-LZTR13-80 aaPF13854Kelch_HCF3-246 aaPF13415Beta-prop_FBX424-107 aaPF13418Beta-prop_TYW414-89 aaPF24996NANM21-92 aaPF01344Kelch_122-59 aaPF07646Kelch_222-59 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA07G064620 | PF24681 | Kelch_KLHDC2_KLHL20_DRC7 | 2 | 193 | 8.5e-96 | 320.2 |
| TkA07G064620 | PF24981 | Beta-prop_ATRN-LZTR1 | 3 | 80 | 4e-56 | 191.1 |
| TkA07G064620 | PF13854 | Kelch_HCF | 3 | 246 | 2.4e-38 | 133.0 |
| TkA07G064620 | PF13415 | Beta-prop_FBX42 | 4 | 107 | 1.2e-66 | 225.0 |
| TkA07G064620 | PF13418 | Beta-prop_TYW4 | 14 | 89 | 2.3e-16 | 61.2 |
| TkA07G064620 | PF24996 | NANM | 21 | 92 | 1.5e-23 | 83.9 |
| TkA07G064620 | PF01344 | Kelch_1 | 22 | 59 | 3e-46 | 155.2 |
| TkA07G064620 | PF07646 | Kelch_2 | 22 | 59 | 1.2e-31 | 107.7 |
| TkA07G064620 | PF13964 | Beta-prop_Calicin | 28 | 89 | 7.1e-12 | 45.7 |
| TkA07G064620 | PF25852 | DUF6242_C | 30 | 107 | 1.2e-07 | 32.3 |
| TkA07G064620 | PF24981 | Beta-prop_ATRN-LZTR1 | 31 | 108 | 4e-56 | 191.1 |
| TkA07G064620 | PF25210 | Kelch_FKB95 | 31 | 58 | 6.3e-19 | 69.4 |
| TkA07G064620 | PF25210 | Kelch_FKB95 | 67 | 167 | 6.3e-19 | 69.4 |
| TkA07G064620 | PF13418 | Beta-prop_TYW4 | 67 | 165 | 2.3e-16 | 61.2 |
| TkA07G064620 | PF01344 | Kelch_1 | 69 | 108 | 3e-46 | 155.2 |
| TkA07G064620 | PF07646 | Kelch_2 | 69 | 107 | 1.2e-31 | 107.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.