TkA07G056420 | RubberDandelionOmics

Gene overview

TkA07G056420

Reference: TK1151 Chr: Chr07 Coordinates: 15012667-15013851 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

864 bp · TkA07G056420|TK1151|cDNA

ATGAACTCTGAAGAAATCGATGAGGAAAGGGGAGAAGATCGAATCAGTACGTTGCAAGATTGCTTACTTCTCGAAATCCTCTCTCGTTTACCTTCCACAAAAGACGCCATCAGAACAGGTACGCTCTCTAAACGATGGGAACATGTTTGGACTTCCGTCCCTACTCTCAGCTATCGACAAAACCCTATCTCAATGTCCGATTTCTTTTCTTTGGTTACCAAAACCCTAACTCAATGTCCCCAACTGCATCTCAAGAAATT...

CDS

Download CDS FASTA

864 bp · TkA07G056420|TK1151|CDS

ATGAACTCTGAAGAAATCGATGAGGAAAGGGGAGAAGATCGAATCAGTACGTTGCAAGATTGCTTACTTCTCGAAATCCTCTCTCGTTTACCTTCCACAAAAGACGCCATCAGAACAGGTACGCTCTCTAAACGATGGGAACATGTTTGGACTTCCGTCCCTACTCTCAGCTATCGACAAAACCCTATCTCAATGTCCGATTTCTTTTCTTTGGTTACCAAAACCCTAACTCAATGTCCCCAACTGCATCTCAAGAAATT...

Protein

Download Protein FASTA

287 aa · TkA07G056420|TK1151|PROTEIN

MNSEEIDEERGEDRISTLQDCLLLEILSRLPSTKDAIRTGTLSKRWEHVWTSVPTLSYRQNPISMSDFFSLVTKTLTQCPQLHLKKFKITWKNLRGLCLKFVEIDEGLIENILSGSPVLERFELEYGHGYNRLNITSKSLKKLVISGYMYTDSFNVDEIVSINAPNILSLKIHRDLAMTKILLLNVSSLMEAKLDFTKMIPCGEVSEKVEEDMLKILIQNLGHVNEVIIGGACSRAVSRLKAKGFEFPSNVKFLLKRKKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G056420`
TK1151 ID	TkA07G056420
OH-1004 ID	LXL04_027366
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	44.100
Protein coverage (%)	TK1151 93.031 / OH-1004 15.245 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G056420

Location Chr07:15012667-15013851 (-)

Description Similar to At1g49610: Putative F-box protein At1g49610

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release
`At5g02930`	Putative F-box/LRR-repeat protein At5g02930.	No verified direct reference in this release
`At5g22660`	F-box/FBD/LRR-repeat protein At5g22660.	No verified direct reference in this release
`At5g22700`	F-box/FBD/LRR-repeat protein At5g22700.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027366 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.832

Rank 1 · TkA07G056420 · TK1151

Cytoplasm0.210

Rank 2 · TkA07G056420 · TK1151

Endoplasmic reticulum0.038

Rank 3 · TkA07G056420 · TK1151

Cell membrane0.037

Rank 4 · TkA07G056420 · TK1151

Mitochondrion0.018

Rank 5 · TkA07G056420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box15-54 aa

PF12937F-box-like22-48 aa

PF24758LRR_At5g5637064-178 aa

PF27002FAM193A_N71-94 aa

PF23622LRR_At1g61320_AtMIF190-191 aa

PF23245RRM_PARP14_2108-127 aa

PF27002FAM193A_N116-154 aa

PF12937F-box-like133-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G056420	`PF00646`	F-box	15	54	0.0019	18.8
TkA07G056420	`PF12937`	F-box-like	22	48	0.047	14.2
TkA07G056420	`PF24758`	LRR_At5g56370	64	178	5.4e-11	43.3
TkA07G056420	`PF27002`	FAM193A_N	71	94	0.23	11.7
TkA07G056420	`PF23622`	LRR_At1g61320_AtMIF1	90	191	7.9e-07	29.5
TkA07G056420	`PF23245`	RRM_PARP14_2	108	127	8.7	7.4
TkA07G056420	`PF27002`	FAM193A_N	116	154	0.23	11.7
TkA07G056420	`PF12937`	F-box-like	133	148	0.047	14.2
TkA07G056420	`PF00646`	F-box	135	144	0.0019	18.8
TkA07G056420	`PF23245`	RRM_PARP14_2	136	164	8.7	7.4
TkA07G056420	`PF23245`	RRM_PARP14_2	178	197	8.7	7.4
TkA07G056420	`PF23245`	RRM_PARP14_2	204	225	8.7	7.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1PE04`	Arabidopsis thaliana	sp\|Q1PE04\|FBL25_ARATH F-box/LRR-repeat protein 25	40.000%	Swiss-Prot	Low
`Q9LYZ2`	Arabidopsis thaliana	sp\|Q9LYZ2\|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930	41.800%	Swiss-Prot	Low
`Q9FNJ5`	Arabidopsis thaliana	sp\|Q9FNJ5\|FDL31_ARATH F-box/FBD/LRR-repeat protein At5g22660	39.800%	Swiss-Prot	Low
`Q9FNJ1`	Arabidopsis thaliana	sp\|Q9FNJ1\|FDL47_ARATH F-box/FBD/LRR-repeat protein At5g22700	40.500%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card