TkA07G052900 | RubberDandelionOmics

Gene overview

TkA07G052900

Reference: TK1151 Chr: Chr07 Coordinates: 14088972-14090866 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1363 bp · TkA07G052900|TK1151|cDNA

TATGTTATCACAAGGAAGAACTACATAACAATTATCGAATTCTAATGATTTAAGCATTATATACATTCCCATTTCTATAGGGATCGAGTGATTTTTGTGTGGGAAAACAGAGCTTTGAAGCCGGCAATGGAAACAACGTTGGAAAAAGACAAAATTGCAGCTAAAATTGCACCTAAACATTAATGTTTCAAAGATTCTGGAGAAACGAAGAAGAAGATCGAATCAGTAAGTTGCCAGACTGCTTACTTCTTGAAATCCTC...

CDS

Download CDS FASTA

1056 bp · TkA07G052900|TK1151|CDS

ATGTTTCAAAGATTCTGGAGAAACGAAGAAGAAGATCGAATCAGTAAGTTGCCAGACTGCTTACTTCTTGAAATCCTCTCTCGTTTACTCTCCACAAAAGCCGCCATTAGAACAGGTACACTCTGCAAACGATGGAAACATCTTTGGACTTCTGTTCCTTCTCTCTATTTCAACGACTGTATACATGAACGGTGCCAACTCTTTTCATTCGTTGACAAAACCCTAACTCAATCTCGCCAACTGAAACTCAAGAAATTTGA...

Protein

Download Protein FASTA

351 aa · TkA07G052900|TK1151|PROTEIN

MFQRFWRNEEEDRISKLPDCLLLEILSRLLSTKAAIRTGTLCKRWKHLWTSVPSLYFNDCIHERCQLFSFVDKTLTQSRQLKLKKFEVDTCYDIQYESQVNNWIRYAIRCNVEEVNLTFWGTRFQAEYLLAQIFFISSCFTDLTLDGCILNPTGAISWKKLRKLSISYGNLDEVLIENILSGSPQLETLVLKDCYGFRRLDITSKSVKNLVFSGYMIPHDEIEADIIEINAPNILSLSIRGELLLWKLLLLKVSSLVEAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G052900`
TK1151 ID	TkA07G052900
OH-1004 ID	LXL04_027366
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	89.600
Protein coverage (%)	TK1151 95.726 / OH-1004 14.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G052900

Location Chr07:14088972-14090866 (+)

Description Similar to At1g49610: Putative F-box protein At1g49610

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69630`	F-box/LRR-repeat protein 13.	No verified direct reference in this release
`At5g54820`	Putative F-box/LRR-repeat protein At5g54820.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At3g29830`	Putative F-box protein At3g29830.	No verified direct reference in this release
`At4g13965`	Putative F-box/FBD/LRR-repeat protein At4g13965.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_027366 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G49610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.830

Rank 1 · TkA07G052900 · TK1151

Cytoplasm0.217

Rank 2 · TkA07G052900 · TK1151

Endoplasmic reticulum0.039

Rank 3 · TkA07G052900 · TK1151

Cell membrane0.036

Rank 4 · TkA07G052900 · TK1151

Plastid0.018

Rank 5 · TkA07G052900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box14-54 aa

PF12937F-box-like14-60 aa

PF30487Ropporin_M22-49 aa

PF23622LRR_At1g61320_AtMIF181-250 aa

PF24758LRR_At5g56370101-241 aa

PF00646F-box170-181 aa

PF00646F-box299-307 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G052900	`PF00646`	F-box	14	54	4e-05	24.1
TkA07G052900	`PF12937`	F-box-like	14	60	4.5e-05	23.8
TkA07G052900	`PF30487`	Ropporin_M	22	49	0.11	13.5
TkA07G052900	`PF23622`	LRR_At1g61320_AtMIF1	81	250	1.4e-14	55.1
TkA07G052900	`PF24758`	LRR_At5g56370	101	241	1.8e-12	48.1
TkA07G052900	`PF00646`	F-box	170	181	4e-05	24.1
TkA07G052900	`PF00646`	F-box	299	307	4e-05	24.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FWZ1`	Arabidopsis thaliana	sp\|Q9FWZ1\|FBL13_ARATH F-box/LRR-repeat protein 13	26.100%	Swiss-Prot	Low
`Q9FFU7`	Arabidopsis thaliana	sp\|Q9FFU7\|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820	26.500%	Swiss-Prot	Low
`Q6NKX3`	Arabidopsis thaliana	sp\|Q6NKX3\|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230	28.900%	Swiss-Prot	Low
`Q9LJ48`	Arabidopsis thaliana	sp\|Q9LJ48\|FB191_ARATH Putative F-box protein At3g29830	23.900%	Swiss-Prot	Low
`Q3EA38`	Arabidopsis thaliana	sp\|Q3EA38\|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965	30.000%	Swiss-Prot	Medium

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