TkA07G038490 | RubberDandelionOmics

Gene overview

TkA07G038490

Reference: TK1151 Chr: Chr07 Coordinates: 10245586-10246317 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

420 bp · TkA07G038490|TK1151|cDNA

ATGTACCTCAACCGGTTGACACTTGGGGTATTGACAATTGGATGTATCAATCCTCATCTCCACAATCCACACAATCCCCCGCATCAAAACCAAGTGTTGACTTCAACCTCAACTATGATCCACCACAACCCATGGGTCGTGATGAAGCAAAGCGATAGAAGAGAGGCAAAAAGCATAGCCACTAGCACTGCTAGCACAAATAGTAGTGTTCAAGAAGATATGCTCGCTTTGTCCGACAATGTTGAGACATACAAGGAAGC...

CDS

Download CDS FASTA

420 bp · TkA07G038490|TK1151|CDS

ATGTACCTCAACCGGTTGACACTTGGGGTATTGACAATTGGATGTATCAATCCTCATCTCCACAATCCACACAATCCCCCGCATCAAAACCAAGTGTTGACTTCAACCTCAACTATGATCCACCACAACCCATGGGTCGTGATGAAGCAAAGCGATAGAAGAGAGGCAAAAAGCATAGCCACTAGCACTGCTAGCACAAATAGTAGTGTTCAAGAAGATATGCTCGCTTTGTCCGACAATGTTGAGACATACAAGGAAGC...

Protein

Download Protein FASTA

139 aa · TkA07G038490|TK1151|PROTEIN

MYLNRLTLGVLTIGCINPHLHNPHNPPHQNQVLTSTSTMIHHNPWVVMKQSDRREAKSIATSTASTNSSVQEDMLALSDNVETYKEAQQIKESAWKIKEKMQLRKIIQQDISNKTGFEYELALQMKKDAVRQLGYHINE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G038490`
TK1151 ID	TkA07G038490
OH-1004 ID	LXL04_005326
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.500
Protein coverage (%)	TK1151 58.993 / OH-1004 10.327 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G038490`
Location	Chr07:10245586-10246317 (+)
Description	Similar to At5g34940: Heparanase-like protein 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005326` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009826 unidimensional cell growth Biological Process GO:0005576 extracellular region Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0004566 beta-glucuronidase activity Molecular Function
KEGG gene cross-reference	ath:AT5G07830 ath:AT5G34940 ath:AT5G61250 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.371

Rank 1 · TkA07G038490 · TK1151

Nucleus0.223

Rank 2 · TkA07G038490 · TK1151

Cytoplasm0.212

Rank 3 · TkA07G038490 · TK1151

Endoplasmic reticulum0.115

Rank 4 · TkA07G038490 · TK1151

Cell membrane0.069

Rank 5 · TkA07G038490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09488Osmo_MPGsynth9-93 aa

PF25690Phage_gp4931-86 aa

PF28642LcsF_C48-74 aa

PF19519DUF605160-128 aa

PF28642LcsF_C77-123 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G038490	`PF09488`	Osmo_MPGsynth	9	93	0.0037	16.9
TkA07G038490	`PF25690`	Phage_gp49	31	86	0.076	13.8
TkA07G038490	`PF28642`	LcsF_C	48	74	0.43	11.6
TkA07G038490	`PF19519`	DUF6051	60	128	0.033	14.0
TkA07G038490	`PF28642`	LcsF_C	77	123	0.43	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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