TkA07G020000 | RubberDandelionOmics

Gene overview

TkA07G020000

Reference: TK1151 Chr: Chr07 Coordinates: 5406170-5409698 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1825 bp · TkA07G020000|TK1151|cDNA

ATCTTGAACAGTGTTTTTACACCCATAAGTTTCATGTAATCCAAAGCAAAATCTAAAATGGCCTGCTCTTCACCTACAATTCACTGCCGATAGTTTAATCTTTTATGTCTGTATTAATTAGGGTTTACGTTTTTCTTCTCAAAATTTCAACTTTATATGGCAAAACCCTCCTGATGCTAACAAACAAAACCCTCTCATCCCGTTTCCCAAACCCCCCCTTCCGAAAAGCACATTTAACAGATAAGAAAACTCGCATTTCT...

CDS

Download CDS FASTA

1287 bp · TkA07G020000|TK1151|CDS

ATGGCGAATCTTAGAACTTCAATGGACGCAGCATTTTACGACCTAAACATAGCCACTCCGCAGACGCTCCACGGCTCTGCGCGGTCAATTCCCGGCGAGCCGGCGCCGTTGGACGGAGCACCCTCCAGTAAACTTCTCAGAATGCAACAGTTATGGCTTTTGGGGAGAGGATTTCCGTTGGGTGTAATTCCCTCTTATGCTCCACCGTTGTGTTCTTCATCACAAAAGGAGCCGGGTTCTTTATCTCTTCAGACAATTTG...

Protein

Download Protein FASTA

428 aa · TkA07G020000|TK1151|PROTEIN

MANLRTSMDAAFYDLNIATPQTLHGSARSIPGEPAPLDGAPSSKLLRMQQLWLLGRGFPLGVIPSYAPPLCSSSQKEPGSLSLQTIWSKQPAENWWLGLIGQIRPIKLLSSVKNEAFRDNSTEPAFKRVVKKFFDKSFYSIGLLSHVDVGPLTSVLVNVEKDGQGKNRRTKALFHHKLPDHDLTLEAAWPELFVDRTGKYFDLPESISLDCSSLISESGLRYRFGLHKNGGAATAVNSGEEEEEVVPASLRPGICAKAAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G020000`
TK1151 ID	TkA07G020000
OH-1004 ID	LXL04_026944
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G020000

Location Chr07:5406170-5409698 (+)

Description Similar to TGD4: Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06960`	Involved in lipid transfer from the endoplasmic reticulum (ER) to plastids.	Lipid trafficking between the endoplasmic reticulum and the plastid in Arabidopsis requires the extraplastidic TGD4 protein.2008 · DOI: 10.1105/tpc.108.061176 Lipid transport mediated by Arabidopsis TGD proteins is unidirectional from the endoplasmic reticulum to the plastid.2010 · DOI: 10.1093/pcp/pcq053 TGD4 involved in endoplasmic reticulum-to-chloroplast lipid trafficking is a phosphatidic acid binding protein.2012 · DOI: 10.1111/j.1365-313x.2012.04900.x The phosphatidic acid binding site of the Arabidopsis trigalactosyldiacylglycerol 4 (TGD4) protein required for lipid import into chloroplasts.2013 · DOI: 10.1074/jbc.m112.438986

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026944 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0034196 acylglycerol transport Biological Process

GO:1990052 ER to chloroplast lipid transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0042803 protein homodimerization activity Molecular Function

GO:0070300 phosphatidic acid binding Molecular Function

KEGG gene cross-reference

ath:AT3G06960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.782

Rank 1 · TkA07G020000 · TK1151

Mitochondrion0.127

Rank 2 · TkA07G020000 · TK1151

Nucleus0.084

Rank 3 · TkA07G020000 · TK1151

Cytoplasm0.063

Rank 4 · TkA07G020000 · TK1151

Endoplasmic reticulum0.040

Rank 5 · TkA07G020000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12600DUF3769328-428 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G020000	`PF12600`	DUF3769	328	428	2.2e-05	24.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M903`	Arabidopsis thaliana	sp\|Q9M903\|TGD4_ARATH Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic	32.200%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card