LXL04_026944 | RubberDandelionOmics

Gene overview

LXL04_026944

Reference: OH-1004 Chr: Chr06 Coordinates: 5726781-5729762 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1311 bp · LXL04_026944|LXL04_026944|OH1004|cDNA

ATGGCGAATCTGAGAACTTCAATGGACGCAGCATTTTACGACCTAAACATAGCCACTCCACAGACACTCCACGGCTCTGCGCGGTCAATTCCCGGCGAGCCGGCGCCGTTGGACGGAGCACCTTCCAGTAAACTTCTCAGAATGCAACAGTTATGGCTTTTGGGGAGAGGATTTCCGTTGGGTGTAATTCCATCTTATGCTCCACCGTTGTGTTCTTCATCACAAAAGGAGCCGGGTTCTTTATCTCTTCAGACAATTTG...

CDS

Download CDS FASTA

1311 bp · LXL04_026944|LXL04_026944|OH1004|CDS

ATGGCGAATCTGAGAACTTCAATGGACGCAGCATTTTACGACCTAAACATAGCCACTCCACAGACACTCCACGGCTCTGCGCGGTCAATTCCCGGCGAGCCGGCGCCGTTGGACGGAGCACCTTCCAGTAAACTTCTCAGAATGCAACAGTTATGGCTTTTGGGGAGAGGATTTCCGTTGGGTGTAATTCCATCTTATGCTCCACCGTTGTGTTCTTCATCACAAAAGGAGCCGGGTTCTTTATCTCTTCAGACAATTTG...

Protein

Download Protein FASTA

436 aa · LXL04_026944|LXL04_026944|OH1004|PROTEIN

MANLRTSMDAAFYDLNIATPQTLHGSARSIPGEPAPLDGAPSSKLLRMQQLWLLGRGFPLGVIPSYAPPLCSSSQKEPGSLSLQTIWSKQPAENWWLGLIGQIRPIKLLSSVKNEAFRDNSTEPAFKRVVKKFFDKSFYSIGLLSHVDVGPLTSVLVNVEKDGQGKNRRTKALFHHKASYTFLLLLPDHDLTLEAAWPELFVDRTGKYFDLPESISLDCSSLISESGLRYRFGLHKNGGAATAVNSGEEEEEVVPASLRP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_026944`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_026944

Location Chr06:5726781-5729762 (+)

Description Similar to TGD4: Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06960`	Involved in lipid transfer from the endoplasmic reticulum (ER) to plastids.	Lipid trafficking between the endoplasmic reticulum and the plastid in Arabidopsis requires the extraplastidic TGD4 protein.2008 · DOI: 10.1105/tpc.108.061176 Lipid transport mediated by Arabidopsis TGD proteins is unidirectional from the endoplasmic reticulum to the plastid.2010 · DOI: 10.1093/pcp/pcq053 TGD4 involved in endoplasmic reticulum-to-chloroplast lipid trafficking is a phosphatidic acid binding protein.2012 · DOI: 10.1111/j.1365-313x.2012.04900.x The phosphatidic acid binding site of the Arabidopsis trigalactosyldiacylglycerol 4 (TGD4) protein required for lipid import into chloroplasts.2013 · DOI: 10.1074/jbc.m112.438986

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026944 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0034196 acylglycerol transport Biological Process

GO:1990052 ER to chloroplast lipid transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0016020 membrane Cellular Component

GO:0042803 protein homodimerization activity Molecular Function

GO:0070300 phosphatidic acid binding Molecular Function

KEGG gene cross-reference

ath:AT3G06960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.832

Rank 1 · LXL04_026944 · OH-1004

Mitochondrion0.090

Rank 2 · LXL04_026944 · OH-1004

Nucleus0.080

Rank 3 · LXL04_026944 · OH-1004

Cytoplasm0.059

Rank 4 · LXL04_026944 · OH-1004

Endoplasmic reticulum0.042

Rank 5 · LXL04_026944 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M903`	Arabidopsis thaliana	Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic	31.663%	Swiss-Prot	moderate database homology

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