TkA07G018310 | RubberDandelionOmics

Gene overview

TkA07G018310

Reference: TK1151 Chr: Chr07 Coordinates: 4914160-4916113 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1258 bp · TkA07G018310|TK1151|cDNA

TTGCGTTTCACTCACAGGGAGCTCAGTTGAATACGTTTCTCTGTGTGATTGCAATCATAGACATCATCAATGTCGGTACGATTGGGCCTAAATGATTTCATAGCTTGTTGTGGAAGCACTAAATTCGCGGAACAAATGGTCGCAGATGGACCTTTTGCTACTTACGACGAAGCTGTTGTTGCCGCGAGGAACATCTGGTTCAATAAGGTTGATGTTCATGGCTGGCTCGAAGCATTTGCTGCGCATCCCCAAATCGGGCA...

CDS

Download CDS FASTA

951 bp · TkA07G018310|TK1151|CDS

ATGTCGGTACGATTGGGCCTAAATGATTTCATAGCTTGTTGTGGAAGCACTAAATTCGCGGAACAAATGGTCGCAGATGGACCTTTTGCTACTTACGACGAAGCTGTTGTTGCCGCGAGGAACATCTGGTTCAATAAGGTTGATGTTCATGGCTGGCTCGAAGCATTTGCTGCGCATCCCCAAATCGGGCAAAATCCTTCTTCAGTTGCTCACAAAAGTTCCACAAGTGCTCAGTGGAGCAAAGGGGAGCAATCGGCAGC...

Protein

Download Protein FASTA

316 aa · TkA07G018310|TK1151|PROTEIN

MSVRLGLNDFIACCGSTKFAEQMVADGPFATYDEAVVAARNIWFNKVDVHGWLEAFAAHPQIGQNPSSVAHKSSTSAQWSKGEQSAALATATDSTLQELYEWNSQYKQKFGFVFLICASGRSTPEILTELKRRFSNRPIVELEIASQEQMKITELRLHKLFTNTSIQDQKSQTSDVTKAEGGHITAPSIPTRSRPPITTHVLDVARGCPADGIEVLLEMQTTNHPGPLFGQSDNAKWIFQGSSATDKDGRSGQLMKMVDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G018310`
TK1151 ID	TkA07G018310
OH-1004 ID	LXL04_026922
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G018310

Location Chr07:4914160-4916113 (+)

Description Similar to TTL: Uric acid degradation bifunctional protein TTL

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58220`	Involved in the last two steps of the degradation of uric acid, i.e. the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) and its stereoselective decarboxylation to (S)-allantoin, a major ureide compound.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026922 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001560 regulation of cell growth by extracellular stimulus Biological Process

GO:0006144 purine nucleobase metabolic process Biological Process

GO:0006147 guanine catabolic process Biological Process

GO:0006148 inosine catabolic process Biological Process

GO:0006149 deoxyinosine catabolic process Biological Process

GO:0006154 adenosine catabolic process Biological Process

GO:0006157 deoxyadenosine catabolic process Biological Process

GO:0006161 deoxyguanosine catabolic process Biological Process

GO:0006196 AMP catabolic process Biological Process

GO:0006204 IMP catabolic process Biological Process

GO:0009114 hypoxanthine catabolic process Biological Process

GO:0009115 xanthine catabolic process Biological Process

KEGG gene cross-reference

ath:AT5G58220

cel:CELE_R09H10.3

mmu:76974

stt:t1822

sty:STY1129

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.588

Rank 1 · TkA07G018310 · TK1151

Peroxisome0.244

Rank 2 · TkA07G018310 · TK1151

Nucleus0.216

Rank 3 · TkA07G018310 · TK1151

Mitochondrion0.183

Rank 4 · TkA07G018310 · TK1151

Cell membrane0.062

Rank 5 · TkA07G018310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09349OHCU_decarbox10-157 aa

PF11517Nab287-160 aa

PF00576Transthyretin197-315 aa

PF24695PITM1-3231-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G018310	`PF09349`	OHCU_decarbox	10	157	5.4e-35	121.9
TkA07G018310	`PF11517`	Nab2	87	160	0.16	13.0
TkA07G018310	`PF00576`	Transthyretin	197	315	3.1e-31	108.9
TkA07G018310	`PF24695`	PITM1-3	231	269	0.12	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LVM5`	Arabidopsis thaliana	sp\|Q9LVM5\|TTHL_ARATH Uric acid degradation bifunctional protein TTL	56.400%	Swiss-Prot	High

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