TkA07G016680 | RubberDandelionOmics

Gene overview

TkA07G016680

Reference: TK1151 Chr: Chr07 Coordinates: 4522321-4528741 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3605 bp · TkA07G016680|TK1151|cDNA

GCATTTGCGCCAAACTGAAAAAAAAAAAGAATGAACTACGAACAGAGGTTAATCGCCGCCGCGAAGTGCGTATTTGAAGGAGACACCCGCGTCGCCGCCGAGGCTCAAGTCAACTGTTCCGACTTCGGTGTAACGGCGACGCTTAAACCTCACCAAATCGAAGGACTGTCATGGCTTATACGCCGATACCTTATCGGTGTCAACGTTATTCTAGCAACAGATGGGACTTGGAAAGACATTACAAGCCATCTCATTCCTAA...

CDS

Download CDS FASTA

2349 bp · TkA07G016680|TK1151|CDS

ATGGGACTTGGAAAGACATTACAAGCCATCTCATTCCTAAGTTACTTAAAGTTCTCTCGTGGCTTACACGGACCCTTTTTGATACTATGTCCTCTTAGTGTAACTGATTGGGTAGACAAACAACACAGACGTACTTTAAGAAAAGAAATGTTTGAACATGTACAAAAACAATCATCACCACCCCATGTGCATTCGTTACCTTTTGATGTGCTCCTTACAACATATGACATAGCTTTAATCGATCAAGACTTTCTTTCCCA...

Protein

Download Protein FASTA

782 aa · TkA07G016680|TK1151|PROTEIN

MGLGKTLQAISFLSYLKFSRGLHGPFLILCPLSVTDWVDKQHRRTLRKEMFEHVQKQSSPPHVHSLPFDVLLTTYDIALIDQDFLSQIPWSYAVIDEAQRLKNPSSVFYNVLRESYMMPRCLLMTGTPIQNSLNELWALLHFCMPSVFGTLDQFCSKFKESKGAPIDKDKFKSLRYILGAFMLRRTKSKLIESGTLSLPPLTEITLMAPLVSLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G016680`
TK1151 ID	TkA07G016680
OH-1004 ID	LXL04_026902
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.800
Protein coverage (%)	TK1151 100.000 / OH-1004 92.593 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G016680

Location Chr07:4522321-4528741 (+)

Description Similar to CHR10: Probable helicase CHR10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44980`	Probable helicase-like transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026902 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006974 DNA damage response Biological Process

GO:0000785 chromatin Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0035861 site of double-strand break Cellular Component

GO:0090734 site of DNA damage Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003678 DNA helicase activity Molecular Function

KEGG gene cross-reference

ath:AT2G44980

bta:524787

hsa:9557

mmu:68058

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.564

Rank 1 · TkA07G016680 · TK1151

Cytoplasm0.429

Rank 2 · TkA07G016680 · TK1151

Mitochondrion0.062

Rank 3 · TkA07G016680 · TK1151

Cell membrane0.043

Rank 4 · TkA07G016680 · TK1151

Endoplasmic reticulum0.037

Rank 5 · TkA07G016680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00176SNF2-rel_dom1-258 aa

PF11496HDA2-3206-463 aa

PF00271Helicase_C279-405 aa

PF11496HDA2-3526-555 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G016680	`PF00176`	SNF2-rel_dom	1	258	3.9e-52	177.9
TkA07G016680	`PF11496`	HDA2-3	206	463	3.6e-08	33.6
TkA07G016680	`PF00271`	Helicase_C	279	405	2.1e-19	70.5
TkA07G016680	`PF11496`	HDA2-3	526	555	3.6e-08	33.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IV45`	Arabidopsis thaliana	sp\|F4IV45\|CHR10_ARATH Probable helicase CHR10	63.200%	Swiss-Prot	High

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