TkA07G008410 | RubberDandelionOmics

Gene overview

TkA07G008410

Reference: TK1151 Chr: Chr07 Coordinates: 2325220-2325632 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

330 bp · TkA07G008410|TK1151|cDNA

ATGGCCAGAATCTACATCGAAGCAGAAAACACAATCAATTACTCCGACGTATTCAAACGAATCGCGGCAAACGCCCTCGTACCTATGAGCCCTCTCGAAAGCTTAGCTTCTGCGGCAGTCCGAACCGCAAACTCATCAAGAGCAACCCTAATTTTGGTTCTAACAAGAGGCGGAGCACCGCGAAGCTGTGATGAAACGCCGGCGAGACATAGTTTGATTTTTAGGGGTTTGGTTCCGGTTTTATCCGTGGGGTCGGCTAA...

CDS

Download CDS FASTA

330 bp · TkA07G008410|TK1151|CDS

ATGGCCAGAATCTACATCGAAGCAGAAAACACAATCAATTACTCCGACGTATTCAAACGAATCGCGGCAAACGCCCTCGTACCTATGAGCCCTCTCGAAAGCTTAGCTTCTGCGGCAGTCCGAACCGCAAACTCATCAAGAGCAACCCTAATTTTGGTTCTAACAAGAGGCGGAGCACCGCGAAGCTGTGATGAAACGCCGGCGAGACATAGTTTGATTTTTAGGGGTTTGGTTCCGGTTTTATCCGTGGGGTCGGCTAA...

Protein

Download Protein FASTA

109 aa · TkA07G008410|TK1151|PROTEIN

MARIYIEAENTINYSDVFKRIAANALVPMSPLESLASAAVRTANSSRATLILVLTRGGAPRSCDETPARHSLIFRGLVPVLSVGSAKASHAELTEEALEFALQHAKEKG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G008410`
TK1151 ID	TkA07G008410
OH-1004 ID	LXL04_026797
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.200
Protein coverage (%)	TK1151 100.000 / OH-1004 94.783 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA07G008410

Location Chr07:2325220-2325632 (+)

Description Similar to Pyruvate kinase, cytosolic isozyme

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26390`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026797 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0006950 response to stress Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G26390

dosa:Os12g0145700

gmx:547791

nta:107797877

sot:102601328

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.251

Rank 1 · TkA07G008410 · TK1151

Mitochondrion0.229

Rank 2 · TkA07G008410 · TK1151

Plastid0.214

Rank 3 · TkA07G008410 · TK1151

Nucleus0.179

Rank 4 · TkA07G008410 · TK1151

Extracellular0.107

Rank 5 · TkA07G008410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02887PK_C33-58 aa

PF02887PK_C65-109 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G008410	`PF02887`	PK_C	33	58	5.2e-05	24.0
TkA07G008410	`PF02887`	PK_C	65	109	5.2e-05	24.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O65595`	Arabidopsis thaliana	sp\|O65595\|KPYC_ARATH Probable pyruvate kinase, cytosolic isozyme	52.900%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card