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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G002170
Reference: TK1151 Chr: Chr07 Coordinates: 554079-556596 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2434 bp · TkA07G002170|TK1151|cDNA

AAAACTATAGATTCGATGATGTATCACACTCGATTATATGATACTCTGACAGGATTTTCAGTTTGATCCACGACAATGAAGACGCCAATCTCCGCATCGAAACGATACGTTCATCAGCTTCTTAAACCCCAGAAATATCCCACGACCACCCATCTCCGCCGTCTCTCCGTTGCATCTGATTCAACACAACCACCTTCACCAGAAGAATTGACGGAAACTGCCATTTCCCAGCTGAAGAACACCGATAATTGGACAAGCGA...

CDS

Download CDS FASTA

2157 bp · TkA07G002170|TK1151|CDS

ATGAAGACGCCAATCTCCGCATCGAAACGATACGTTCATCAGCTTCTTAAACCCCAGAAATATCCCACGACCACCCATCTCCGCCGTCTCTCCGTTGCATCTGATTCAACACAACCACCTTCACCAGAAGAATTGACGGAAACTGCCATTTCCCAGCTGAAGAACACCGATAATTGGACAAGCGACGCCAATCTCCACCAGCAGCTCCTCTCTCTACCCCCTCAATCTCTCATCAAAATCGCTCGCCAGCTCGAAACTTC...

Protein

Download Protein FASTA

718 aa · TkA07G002170|TK1151|PROTEIN

MKTPISASKRYVHQLLKPQKYPTTTHLRRLSVASDSTQPPSPEELTETAISQLKNTDNWTSDANLHQQLLSLPPQSLIKIARQLETSTVLELAIREEDSVFLADVFNLSKELKVSLTPNSAVLLIRYFFSINKVQESLNLYADLDPDAKNTNVNNTLLGLLLSSKNFEDAHKLLDEMLQPETKFPPNETTLSIVFSMLLRWNKGKEDEKIIDLIPKFGIHGMFPCKVWLTQLTTRLCRSNRNDKAWDLLHEYIKFNKLEA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G002170
TK1151 IDTkA07G002170
OH-1004 IDLXL04_026693
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G002170
LocationChr07:554079-556596 (+)
DescriptionSimilar to At3g61520: Pentatricopeptide repeat-containing protein At3g61520, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61520 Pentatricopeptide repeat-containing protein At3g61520, mitochondrial. No verified direct reference in this release
At5g28460 Pentatricopeptide repeat-containing protein At5g28460. No verified direct reference in this release
At2g17670 Pentatricopeptide repeat-containing protein At2g17670. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026693 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G61520
ath:AT5G28460
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.866
Rank 1 · TkA07G002170 · TK1151
Plastid0.066
Rank 2 · TkA07G002170 · TK1151
Nucleus0.053
Rank 3 · TkA07G002170 · TK1151
Cytoplasm0.040
Rank 4 · TkA07G002170 · TK1151
Cell membrane0.013
Rank 5 · TkA07G002170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20167Retrotransp-rel28-84 aa
PF24760TPR_IF140_C44-98 aa
PF06239ECSIT_N51-87 aa
PF20946Ctf4_C79-95 aa
PF08579RPM284-161 aa
PF29070MSC6_N86-206 aa
PF23276TPR_2488-146 aa
PF17049AEP1101-190 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G002170PF20167Retrotransp-rel28840.1412.8
TkA07G002170PF24760TPR_IF140_C44985.5e-1246.9
TkA07G002170PF06239ECSIT_N51870.04113.9
TkA07G002170PF20946Ctf4_C79950.0006720.5
TkA07G002170PF08579RPM2841610.03415.3
TkA07G002170PF29070MSC6_N862066e-37128.4
TkA07G002170PF23276TPR_24881461.4e-35122.8
TkA07G002170PF17049AEP11011904.9e-0626.6
TkA07G002170PF13041PPR_21241431.3e-145474.1
TkA07G002170PF13424TPR_121321760.05514.4
TkA07G002170PF13170DUF40031331960.2311.6
TkA07G002170PF14559TPR_191351801.1e-0836.0
TkA07G002170PF24760TPR_IF140_C1411775.5e-1246.9
TkA07G002170PF00637Clathrin1461757.9e-0523.1
TkA07G002170PF25062ARM_TT21_N1481800.0006220.3
TkA07G002170PF24603TPR_301491817.5e-0627.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M316Arabidopsis thalianasp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520, mitochondrial42.600%Swiss-ProtLow
Q9LKU8Arabidopsis thalianasp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g2846041.300%Swiss-ProtLow
Q84J71Arabidopsis thalianasp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g1767026.800%Swiss-ProtLow

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