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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_026693
Reference: OH-1004 Chr: Chr06 Coordinates: 1473955-1476195 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2241 bp · LXL04_026693|LXL04_026693|OH1004|cDNA

ATGAAGACGCCAATCTCCGCATCGAAACGATACGTTCATCAGCTTCTTAAACCCCAGAAATATCCCACGACCACCCATCTCCGCCGTCTCTCCGTTGCATCTGATTCAACACAACCACCTTCACCAGAAGAATTGACGGAAACTGCCATTTCCCAGCTGAAGAACACCGATAATTGGACAAGCGACGCCAATCTCCACCAGCAGCTCCTCTCTCTACCCCCTCAATCTCTCATCAAAATCGCTCGCCAGCTCGAAACTTC...

CDS

Download CDS FASTA

2241 bp · LXL04_026693|LXL04_026693|OH1004|CDS

ATGAAGACGCCAATCTCCGCATCGAAACGATACGTTCATCAGCTTCTTAAACCCCAGAAATATCCCACGACCACCCATCTCCGCCGTCTCTCCGTTGCATCTGATTCAACACAACCACCTTCACCAGAAGAATTGACGGAAACTGCCATTTCCCAGCTGAAGAACACCGATAATTGGACAAGCGACGCCAATCTCCACCAGCAGCTCCTCTCTCTACCCCCTCAATCTCTCATCAAAATCGCTCGCCAGCTCGAAACTTC...

Protein

Download Protein FASTA

746 aa · LXL04_026693|LXL04_026693|OH1004|PROTEIN

MKTPISASKRYVHQLLKPQKYPTTTHLRRLSVASDSTQPPSPEELTETAISQLKNTDNWTSDANLHQQLLSLPPQSLIKIARQLETSSKALQFFHFIHDNQSTSLSPPPLSSIFQAVLELAIREEDSVFLADVFSLSKELKVSLTPNSAVLLIRYFFSINKVQESLNLYADLDPDAKNTNVNNTLLGLLLSSKNFEDAHKLLDEMLQPETKFPPNETTLSIVFSMLLRWNKGKEDEKIIDLIPKFGIHGMFPCKVWLTQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_026693
TK1151 IDTkA07G002170
OH-1004 IDLXL04_026693
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_026693
LocationChr06:1473955-1476195 (+)
DescriptionSimilar to At3g61520: Pentatricopeptide repeat-containing protein At3g61520, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61520 Pentatricopeptide repeat-containing protein At3g61520, mitochondrial. No verified direct reference in this release
At5g28460 Pentatricopeptide repeat-containing protein At5g28460. No verified direct reference in this release
At5g64320 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At1g63130 Pentatricopeptide repeat-containing protein At1g63130, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026693 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G61520
ath:AT5G28460
ath:AT5G64320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.859
Rank 1 · LXL04_026693 · OH-1004
Plastid0.064
Rank 2 · LXL04_026693 · OH-1004
Nucleus0.060
Rank 3 · LXL04_026693 · OH-1004
Cytoplasm0.043
Rank 4 · LXL04_026693 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_026693 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N82-234 aa
PF13041.13PPR_2182-226 aa
PF13041.13PPR_2291-335 aa
PF13812.13PPR_3291-331 aa
PF13812.13PPR_3310-370 aa
PF12854.14PPR_1318-350 aa
PF13041.13PPR_2321-351 aa
PF01535.27PPR324-351 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_026693PF29070.1MSC6_N822345.9e-37128.4
LXL04_026693PF13041.13PPR_21822264e-145472.6
LXL04_026693PF13041.13PPR_22913354e-145472.6
LXL04_026693PF13812.13PPR_32913313.8e-72239.0
LXL04_026693PF13812.13PPR_33103703.8e-72239.0
LXL04_026693PF12854.14PPR_13183502.7e-122398.8
LXL04_026693PF13041.13PPR_23213514e-145472.6
LXL04_026693PF01535.27PPR3243511.3e-96311.0
LXL04_026693PF12854.14PPR_13583772.7e-122398.8
LXL04_026693PF13812.13PPR_33584073.8e-72239.0
LXL04_026693PF13041.13PPR_23604104e-145472.6
LXL04_026693PF29070.1MSC6_N3914935.9e-37128.4
LXL04_026693PF12854.14PPR_13934242.7e-122398.8
LXL04_026693PF13812.13PPR_33934403.8e-72239.0
LXL04_026693PF13041.13PPR_23964454e-145472.6
LXL04_026693PF23276.3TPR_243984946.8e-36123.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M316Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g61520, mitochondrial45.214%Swiss-Protmoderate database homology
Q9LKU8Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g2846043.207%Swiss-Protmoderate database homology
Q9FMF6Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g64320, mitochondrial31.664%Swiss-Protmoderate database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial33.181%Swiss-Protmoderate database homology
Q9CAN0Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63130, mitochondrial31.273%Swiss-Protmoderate database homology

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