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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G000370
Reference: TK1151 Chr: Chr07 Coordinates: 91884-95609 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1769 bp · TkA07G000370|TK1151|cDNA

CTTAACGCTCGTACACGTGTCTGGTGACGTGGAGTGTTGCCTTGCCGCCCTTCTCTCTCTGCCTCCTCTCTCTACAAGCTGCAAAAAGCCCACACTTCTTCCCTCCTCCCTTCCCATACCTCGTTTTGGAGAGAGAGAGAGAGAGAGAGAGAAAGTCTAGAGAGAGAAAATGCAGTTCTGAATTTTCTTCTTACTCAGTGGAGTAAGCAGGTATATAAAGTCAAACATTGTAGTTGAGTGTTGACCAGTGCTTGAATTCC...

CDS

Download CDS FASTA

1053 bp · TkA07G000370|TK1151|CDS

ATGGGCCACTGTGAAGAGATAAAGACTTGTAAGCCAGAAAAACCATCTTCACCACCACCTGAGCATCAGCAGACCGGTGTTCACGCATACCCCGATTGGGCCGCCATGCAGGCTTATTATGGTCCTAGAATGCCTGTACCCCCATATTTCAACTCATCTGTTGCATCCGGTCATCCTCCTCCACCTTACATGTGGGCACCACCACAGCATATGATGCCACCTTATGCTGCAATGTATCCACATCCTGGAGTCCATCTTGC...

Protein

Download Protein FASTA

350 aa · TkA07G000370|TK1151|PROTEIN

MGHCEEIKTCKPEKPSSPPPEHQQTGVHAYPDWAAMQAYYGPRMPVPPYFNSSVASGHPPPPYMWAPPQHMMPPYAAMYPHPGVHLASPMSIDSPAKSSGNSERGLMKKLKGFDGLAMSIGNGNENGISHSHSGETEGSSEGSDGNTTSGKRTIPPGKVSKTEPVSGNFFSNEASKKATALTVVTPPNPNSDSEIKKSPSMMPNEALLQNERELKRERRKQSNRESARRSRLRKQAEAEELAIKVDALTTENLTLKTEIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G000370
TK1151 IDTkA07G000370
OH-1004 IDLXL04_026665
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)89.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G000370
LocationChr07:91884-95609 (+)
DescriptionSimilar to CPRF1: Common plant regulatory factor 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46270 Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. No verified direct reference in this release
At4g01120 Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. No verified direct reference in this release
At4g36730 Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026665 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009637 response to blue light Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0019760 glucosinolate metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0043565 sequence-specific DNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G46270
ath:AT4G01120
ath:AT4G36730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978
Rank 1 · TkA07G000370 · TK1151
Cytoplasm0.089
Rank 2 · TkA07G000370 · TK1151
Cell membrane0.026
Rank 3 · TkA07G000370 · TK1151
Endoplasmic reticulum0.011
Rank 4 · TkA07G000370 · TK1151
Mitochondrion0.006
Rank 5 · TkA07G000370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07777MFMR1-85 aa
PF16596MFMR_assoc103-167 aa
PF02183HALZ204-217 aa
PF25450Rab11-FIP3208-294 aa
PF16596MFMR_assoc209-231 aa
PF00170bZIP_1211-273 aa
PF03131bZIP_Maf212-276 aa
PF07716bZIP_2213-263 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G000370PF07777MFMR1854.4e-2485.6
TkA07G000370PF16596MFMR_assoc1031676.1e-1040.4
TkA07G000370PF02183HALZ2042170.01715.9
TkA07G000370PF25450Rab11-FIP32082940.007117.4
TkA07G000370PF16596MFMR_assoc2092316.1e-1040.4
TkA07G000370PF00170bZIP_12112737.7e-2174.7
TkA07G000370PF03131bZIP_Maf2122760.00717.6
TkA07G000370PF07716bZIP_22132635.7e-0936.6
TkA07G000370PF02183HALZ2392650.01715.9
TkA07G000370PF07716bZIP_22672855.7e-0936.6
TkA07G000370PF02183HALZ2682800.01715.9
TkA07G000370PF00170bZIP_12722887.7e-2174.7
TkA07G000370PF03131bZIP_Maf2792920.00717.6
TkA07G000370PF07777MFMR2852884.4e-2485.6
TkA07G000370PF16596MFMR_assoc3013366.1e-1040.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P42776Arabidopsis thalianasp|P42776|GBF3_ARATH G-box-binding factor 348.000%Swiss-ProtMedium
P42775Arabidopsis thalianasp|P42775|GBF2_ARATH G-box-binding factor 239.300%Swiss-ProtMedium
P42774Arabidopsis thalianasp|P42774|GBF1_ARATH G-box-binding factor 138.200%Swiss-ProtMedium

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