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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G466240
Reference: TK1151 Chr: Chr06 Coordinates: 115357885-115360696 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1523 bp · TkA06G466240|TK1151|cDNA

CCCCTATCTATCCTCTATTCAATAATCCATTTCCACTGTGCACAAAAAAATGGCGTCTTCACTTTCCCGTCATTTCTCAACTGCGTCACGAGATTCCATTTCTACCCATGGGTCAACAACTGTCTTCAACCACCACTCTCCACCTCTGTTCCTCCAGGTCCAGTATCCAACCAGTGGTGGAGCTCAGTTCTCTAAGTTCAAATGCTCCGCCGCGGGTTCTGAGACCGGGTTCTTCACGAAATTGGGGCGGTTAATAAAAG...

CDS

Download CDS FASTA

1143 bp · TkA06G466240|TK1151|CDS

ATGGCGTCTTCACTTTCCCGTCATTTCTCAACTGCGTCACGAGATTCCATTTCTACCCATGGGTCAACAACTGTCTTCAACCACCACTCTCCACCTCTGTTCCTCCAGGTCCAGTATCCAACCAGTGGTGGAGCTCAGTTCTCTAAGTTCAAATGCTCCGCCGCGGGTTCTGAGACCGGGTTCTTCACGAAATTGGGGCGGTTAATAAAAGAGAAGGCGAAAAAGGACGTGGAAAAGATATTCTCTGGTGGTTTCTCGAA...

Protein

Download Protein FASTA

380 aa · TkA06G466240|TK1151|PROTEIN

MASSLSRHFSTASRDSISTHGSTTVFNHHSPPLFLQVQYPTSGGAQFSKFKCSAAGSETGFFTKLGRLIKEKAKKDVEKIFSGGFSKTRDNLAVIDELLLYWNLSDTDRVLDELEEALLVSDFGPKITLKIVESLRDDIYAGKLKSGTEIKDALKNSVLDLLTKRGAKTELKLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKSEGASILMAAGDTFRAAASDQLEIWAERTGCEIVSAEKEKAKASSVLSQAVKKGKEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G466240
TK1151 IDTkA06G466240
OH-1004 IDLXL04_022678
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G466240
LocationChr06:115357885-115360696 (+)
DescriptionSimilar to CPFTSY: Cell division protein FtsY homolog, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g45770 Signal recognition particle receptor protein.
Involvement of a chloroplast homologue of the signal recognition particle receptor protein, FtsY, in protein targeting to thylakoids.1999 · DOI: 10.1016/s0014-5793(99)00305-1
Non-identical contributions of two membrane-bound cpSRP components, cpFtsY and Alb3, to thylakoid biogenesis.2008 · DOI: 10.1111/j.1365-313x.2008.03659.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022678 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006605 protein targeting Biological Process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane Biological Process
GO:0009772 photosynthetic electron transport in photosystem II Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0045038 protein import into chloroplast thylakoid membrane Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
KEGG gene cross-reference
aae:aq_920
ath:AT2G45770
nma:NMA0291
nme:NMB0045
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.971
Rank 1 · TkA06G466240 · TK1151
Mitochondrion0.041
Rank 2 · TkA06G466240 · TK1151
Cytoplasm0.016
Rank 3 · TkA06G466240 · TK1151
Nucleus0.015
Rank 4 · TkA06G466240 · TK1151
Cell membrane0.011
Rank 5 · TkA06G466240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13401AAA_2245-97 aa
PF13173AAA_1477-98 aa
PF02881SRP54_N107-156 aa
PF19975DO-GTPase1128-172 aa
PF00005ABC_tran171-252 aa
PF25199nSTAND_NTPase5172-267 aa
PF06414Zeta_toxin175-269 aa
PF00448SRP54178-379 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G466240PF13401AAA_2245970.001519.6
TkA06G466240PF13173AAA_1477980.1213.1
TkA06G466240PF02881SRP54_N1071562.5e-0937.9
TkA06G466240PF19975DO-GTPase11281720.0413.9
TkA06G466240PF00005ABC_tran1712520.005418.0
TkA06G466240PF25199nSTAND_NTPase51722670.0002521.6
TkA06G466240PF06414Zeta_toxin1752690.0007519.7
TkA06G466240PF00448SRP541783796e-73245.4
TkA06G466240PF01583APS_kinase1782260.05214.3
TkA06G466240PF20720nSTAND31782120.1212.8
TkA06G466240PF13401AAA_221792730.001519.6
TkA06G466240PF13604AAA_301792260.002118.6
TkA06G466240PF09848SLFN-g3_helicase1792750.07313.1
TkA06G466240PF13173AAA_141792250.1213.1
TkA06G466240PF05729NACHT1802050.006317.1
TkA06G466240PF03205MobB1802090.08213.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80842Arabidopsis thalianasp|O80842|CFTSY_ARATH Cell division protein FtsY homolog, chloroplastic82.600%Swiss-ProtHigh

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