TkA06G286760 | RubberDandelionOmics

Gene overview

TkA06G286760

Reference: TK1151 Chr: Chr06 Coordinates: 72283187-72286365 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1389 bp · TkA06G286760|TK1151|cDNA

ATGGAATCGAAACCAATCGCATCTCCATTTGAAATCGGGAGGGTAAATATAGAGATGGAAATCGTCTGGCGTGCAAGGGAATCGGCGTGCAAGGGGAATCGGAGAAGCGTGGTTGAGTGTTGGAACTTGGAACAAGGCACATGGGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGACGAGTCTTCGGTGGTCACCGTTTCGGTTGTGGCAGCTTTAACGAAAGACCTCCTGACCAAGTTATTTTATCACAACCATGT...

CDS

Download CDS FASTA

1389 bp · TkA06G286760|TK1151|CDS

ATGGAATCGAAACCAATCGCATCTCCATTTGAAATCGGGAGGGTAAATATAGAGATGGAAATCGTCTGGCGTGCAAGGGAATCGGCGTGCAAGGGGAATCGGAGAAGCGTGGTTGAGTGTTGGAACTTGGAACAAGGCACATGGGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGACGAGTCTTCGGTGGTCACCGTTTCGGTTGTGGCAGCTTTAACGAAAGACCTCCTGACCAAGTTATTTTATCACAACCATGT...

Protein

Download Protein FASTA

462 aa · TkA06G286760|TK1151|PROTEIN

MESKPIASPFEIGRVNIEMEIVWRARESACKGNRRSVVECWNLEQGTWEAGMAEADSVVDESSVVTVSVVAALTKDLLTKLFYHNHVDFESRCIANFAEVSALVDVYEGEAVTKLINEKIPYFNASIYLQNKTQIGKVDEIFGLKGSQSDGRIFGHLPDIYARAPVLPMAIRQDTIVAIRKRDAWGSEKLLRLANVNDKYTMCTYPVHPDQNFSVSGDDHILGSKLKFPSHCTIKMSSSAQDPFYILKEEIQDSIHALQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G286760`
TK1151 ID	TkA06G286760
OH-1004 ID	LXL04_023623
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	79.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G286760

Location Chr06:72283187-72286365 (-)

Description Similar to GAL1: Galactokinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06580`	Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal).	No verified direct reference in this release
`At3g03920`	Required for ribosome biogenesis.	No verified direct reference in this release
`At1g28490`	Vesicle trafficking protein that functions in the secretory pathway.	OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress.2002 · DOI: 10.1105/tpc.006981 YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.2005 · DOI: 10.1016/j.jmb.2005.04.061 Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis.2012 · DOI: 10.1038/cr.2011.129 Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159 CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1.2015 · DOI: 10.1104/pp.114.249003
`At5g18180`	Required for ribosome biogenesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000454 snoRNA guided rRNA pseudouridine synthesis Biological Process

GO:0006012 galactose metabolic process Biological Process

GO:0031120 snRNA pseudouridine synthesis Biological Process

GO:0046835 carbohydrate phosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0031429 box H/ACA snoRNP complex Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G03920

ath:AT3G06580

ath:AT5G18180

kla:KLLA0_F21604g

pic:PICST_75322

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.398

Rank 1 · TkA06G286760 · TK1151

Nucleus0.361

Rank 2 · TkA06G286760 · TK1151

Mitochondrion0.147

Rank 3 · TkA06G286760 · TK1151

Cell membrane0.138

Rank 4 · TkA06G286760 · TK1151

Endoplasmic reticulum0.090

Rank 5 · TkA06G286760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22256BDI_1685-like_C27-79 aa

PF04410Gar199-143 aa

PF10509GalKase_gal_bdg161-181 aa

PF09177STX6_10_61_N242-313 aa

PF09177STX6_10_61_N310-338 aa

PF09177STX6_10_61_N359-374 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G286760	`PF22256`	BDI_1685-like_C	27	79	0.057	13.9
TkA06G286760	`PF04410`	Gar1	99	143	1.9e-10	41.1
TkA06G286760	`PF10509`	GalKase_gal_bdg	161	181	0.0028	17.9
TkA06G286760	`PF09177`	STX6_10_61_N	242	313	6.1e-10	40.2
TkA06G286760	`PF09177`	STX6_10_61_N	310	338	6.1e-10	40.2
TkA06G286760	`PF09177`	STX6_10_61_N	359	374	6.1e-10	40.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SEE5`	Arabidopsis thaliana	sp\|Q9SEE5\|GALK1_ARATH Galactokinase	44.100%	Swiss-Prot	Low
`Q8VZT0`	Arabidopsis thaliana	sp\|Q8VZT0\|NLAL1_ARATH Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	73.300%	Swiss-Prot	Low
`Q946Y7`	Arabidopsis thaliana	sp\|Q946Y7\|SYP61_ARATH Syntaxin-61	59.300%	Swiss-Prot	Low
`Q9FK53`	Arabidopsis thaliana	sp\|Q9FK53\|NLAL2_ARATH H/ACA ribonucleoprotein complex subunit 1-like protein 2	68.900%	Swiss-Prot	Low

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