LXL04_023623 | RubberDandelionOmics

Gene overview

LXL04_023623

Reference: OH-1004 Chr: Chr05 Coordinates: 56529500-56532676 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1608 bp · LXL04_023623|LXL04_023623|OH1004|cDNA

ATGGAATCGAAACCAATCGCATCTCCATTTGAAATCGGGAGGGTAAATATAGAGATGGAAATCGTCTGGCGTGCAAGGGAATCGGCGTGCAAGGGGAATCGGAGAAGCGTGGTTGAGTGTTGGAACTTGGAACAAGGCACATGGGAGGTTTGTCGGTTCTGTTTCTCTACACGCTCGGTTCCTAAAATTATTGATTGTTTCCTTGATTCTGAAGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGACGAGTCTTCGGT...

CDS

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1608 bp · LXL04_023623|LXL04_023623|OH1004|CDS

ATGGAATCGAAACCAATCGCATCTCCATTTGAAATCGGGAGGGTAAATATAGAGATGGAAATCGTCTGGCGTGCAAGGGAATCGGCGTGCAAGGGGAATCGGAGAAGCGTGGTTGAGTGTTGGAACTTGGAACAAGGCACATGGGAGGTTTGTCGGTTCTGTTTCTCTACACGCTCGGTTCCTAAAATTATTGATTGTTTCCTTGATTCTGAAGAGGCAGGGATGGCAGAGGCCGATTCGGTGGTCGACGAGTCTTCGGT...

Protein

Download Protein FASTA

535 aa · LXL04_023623|LXL04_023623|OH1004|PROTEIN

MESKPIASPFEIGRVNIEMEIVWRARESACKGNRRSVVECWNLEQGTWEVCRFCFSTRSVPKIIDCFLDSEEAGMAEADSVVDESSVVTVSVVAALTKDLLTKLFYHNHVDFESRCIANFAEVSALVDVYEGEAVTKLINEKIPYFNASIYLQNKTQIGKVDEIFGLKGSQSDGRIFGHLPDIYARAPVLPMAIRQDTIVAIRKRDAWGSEKLLRLANVNDKYTMCTYPVHPDQNFSVSGDDHILGSKLKFPSHCTIKMS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023623`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023623

Location Chr05:56529500-56532676 (-)

Description Similar to GAL1: Galactokinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06580`	Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal).	No verified direct reference in this release
`At3g03920`	Required for ribosome biogenesis.	No verified direct reference in this release
`At5g18180`	Required for ribosome biogenesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023623 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000454 snoRNA guided rRNA pseudouridine synthesis Biological Process

GO:0006012 galactose metabolic process Biological Process

GO:0031120 snRNA pseudouridine synthesis Biological Process

GO:0046835 carbohydrate phosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0031429 box H/ACA snoRNP complex Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G03920

ath:AT3G06580

ath:AT5G18180

kla:KLLA0_F21604g

pic:PICST_75322

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.420

Rank 1 · LXL04_023623 · OH-1004

Nucleus0.374

Rank 2 · LXL04_023623 · OH-1004

Mitochondrion0.145

Rank 3 · LXL04_023623 · OH-1004

Cell membrane0.113

Rank 4 · LXL04_023623 · OH-1004

Endoplasmic reticulum0.078

Rank 5 · LXL04_023623 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04410.21Gar1122-166 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023623	`PF04410.21`	Gar1	122	166	2.6e-10	40.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SEE5`	Arabidopsis thaliana	Galactokinase	45.794%	Swiss-Prot	weak database homology
`Q8VZT0`	Arabidopsis thaliana	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1	73.333%	Swiss-Prot	weak database homology
`Q9FK53`	Arabidopsis thaliana	H/ACA ribonucleoprotein complex subunit 1-like protein 2	68.889%	Swiss-Prot	weak database homology

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