TkA06G238350 | RubberDandelionOmics

Gene overview

TkA06G238350

Reference: TK1151 Chr: Chr06 Coordinates: 61099510-61103110 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2661 bp · TkA06G238350|TK1151|cDNA

AAAACAACTATTTTGCAAGCTAAAAACAGTGTTTGGACATTAGCCACAAAAGATTTGAGAGGGGCACAATAAGAGAAAGCAAGGAAAAAAGAGGGGATATTCGAAATTATCATAGTCGGTACGAACGAGATTCCACCGTTATTCGGATCACAGAAGTAGGGAGCAGGAACTCATAAATTGGGCACGCAAATGCAATTTTGTTATGCGATTGACCCTAACGAAATTGCAACCTTCCTTCGCTAAATTTCATGTCCATCTTG...

CDS

Download CDS FASTA

2079 bp · TkA06G238350|TK1151|CDS

ATGTCCATCTTGCCCTCTCAAAATCTTGGTTCATCGTCTTCGACATCTAATCTTTACGCTCAAAACCCTAATCCCAATCATGGATCCAATCTACCACAACCCGACTCTCCTTCGCACCCGACTCACGCCCTTCAATCTCTTCGAATCACCGCTCCTGTTGACATGCCTGATAGACTCACAGAATCGACTGCTCCAACACCGGAAACTTCTGGTGGAATTTCCAAAAAGGTGAAAGAAGACCATAAACTAAATGGCAAAAA...

Protein

Download Protein FASTA

692 aa · TkA06G238350|TK1151|PROTEIN

MSILPSQNLGSSSSTSNLYAQNPNPNHGSNLPQPDSPSHPTHALQSLRITAPVDMPDRLTESTAPTPETSGGISKKVKEDHKLNGKKIPDHQKSGQSSFGSSQQKGSRSNHQGGTPTSSGRKAQTVNGNHLLNFHYDPITRPQARPNPPRRLPKRKPYNKDLFLQANYKFVLLDSGNRAPESMDPDKMLQWEDIICLKYFTPHPTNCPICLEELLCPQMTSCGHIFCFPCILRYFLMGEDDDHKRESWKKCPLCFMMISS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G238350`
TK1151 ID	TkA06G238350
OH-1004 ID	LXL04_023702
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G238350`
Location	Chr06:61099510-61103110 (-)
Description	Similar to rnf10: RING finger protein 10
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_023702` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006513 protein monoubiquitination Biological Process GO:0032790 ribosome disassembly Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0051865 protein autoubiquitination Biological Process GO:0070651 nonfunctional rRNA decay Biological Process GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0022626 cytosolic ribosome Cellular Component
KEGG gene cross-reference	bta:520757 hsa:9921 mmu:50849 rno:288710 xla:734904 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.475

Rank 1 · TkA06G238350 · TK1151

Nucleus0.464

Rank 2 · TkA06G238350 · TK1151

Cell membrane0.079

Rank 3 · TkA06G238350 · TK1151

Golgi apparatus0.060

Rank 4 · TkA06G238350 · TK1151

Lysosome / Vacuole0.056

Rank 5 · TkA06G238350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13445zf-RING_UBOX195-204 aa

PF15227zf-C3HC4_4195-200 aa

PF12678zf-rbx1195-254 aa

PF13920zf-C3HC4_3205-259 aa

PF13639zf-RING_2206-254 aa

PF13923zf-C3HC4_2206-254 aa

PF14634zf-RING_5206-254 aa

PF26191RING-HC_RBR_RNF216206-233 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G238350	`PF13445`	zf-RING_UBOX	195	204	7.2e-06	26.6
TkA06G238350	`PF15227`	zf-C3HC4_4	195	200	0.00069	20.4
TkA06G238350	`PF12678`	zf-rbx1	195	254	7.2	7.6
TkA06G238350	`PF13920`	zf-C3HC4_3	205	259	0.019	15.5
TkA06G238350	`PF13639`	zf-RING_2	206	254	4.9e-05	24.2
TkA06G238350	`PF13923`	zf-C3HC4_2	206	254	9.4e-05	22.9
TkA06G238350	`PF14634`	zf-RING_5	206	254	0.00017	22.2
TkA06G238350	`PF26191`	RING-HC_RBR_RNF216	206	233	3.2	8.7
TkA06G238350	`PF00097`	zf-C3HC4	207	254	3.1e-07	30.9
TkA06G238350	`PF24921`	RING_XB3-XBAT31	207	258	9.9e-07	29.4
TkA06G238350	`PF13445`	zf-RING_UBOX	207	251	7.2e-06	26.6
TkA06G238350	`PF15227`	zf-C3HC4_4	207	254	0.00069	20.4
TkA06G238350	`PF21363`	TRAF3_RING	214	231	3.4	8.2
TkA06G238350	`PF13923`	zf-C3HC4_2	250	259	9.4e-05	22.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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