TkA06G202000 | RubberDandelionOmics

Gene overview

TkA06G202000

Reference: TK1151 Chr: Chr06 Coordinates: 52470822-52473680 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1765 bp · TkA06G202000|TK1151|cDNA

CGTGGACCTAAACGTCTAAAACCCTTGCTGCTGTTTTGGAGAGGAAATACCGCACTACTTTCTCGTTGTGTTCCATCATCAATGGCGGCGGCTTCTTCTTCTTTGTCTAACCTTCAATTTCAATCACTTTCTTTCGCTAAAACCCTAAATCAGTCATCAAAGCCGATCACTCCCAAAAACTTAATTTCTTATAAACCCTGTTCCGGAACACTCGCTATCCGAGCCGTCATATCGCAAAACCCTACAGAAACCCAGACATT...

CDS

Download CDS FASTA

1446 bp · TkA06G202000|TK1151|CDS

ATGGCGGCGGCTTCTTCTTCTTTGTCTAACCTTCAATTTCAATCACTTTCTTTCGCTAAAACCCTAAATCAGTCATCAAAGCCGATCACTCCCAAAAACTTAATTTCTTATAAACCCTGTTCCGGAACACTCGCTATCCGAGCCGTCATATCGCAAAACCCTACAGAAACCCAGACATTTCAGCATTGCTTCACCAAGAAAGACGATGGCTATCTGTACTGTGAGGGTCTCAAGGTCCAAGAGGTCATGGAGGCCGTTGA...

Protein

Download Protein FASTA

481 aa · TkA06G202000|TK1151|PROTEIN

MAAASSSLSNLQFQSLSFAKTLNQSSKPITPKNLISYKPCSGTLAIRAVISQNPTETQTFQHCFTKKDDGYLYCEGLKVQEVMEAVERRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFPILQHLKNLGCGAVLVSGNELRLAIRAGFDPTRCIFNGNGKLLDDLVLAAQEGVFVNIDSEFDLDNIVSAAKIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G202000`
TK1151 ID	TkA06G202000
OH-1004 ID	LXL04_023881
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 96.252 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G202000

Location Chr06:52470822-52473680 (-)

Description Similar to LYSA1: Diaminopimelate decarboxylase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11880`	Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.	No verified direct reference in this release
`At3g14390`	Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0440000`	Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023881 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009089 L-lysine biosynthetic process via diaminopimelate Biological Process

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0008836 diaminopimelate decarboxylase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

KEGG gene cross-reference

ath:AT3G14390

ath:AT5G11880

dosa:Os02g0440000

nme:NMB1976

pae:PA5277

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.947

Rank 1 · TkA06G202000 · TK1151

Mitochondrion0.074

Rank 2 · TkA06G202000 · TK1151

Cytoplasm0.053

Rank 3 · TkA06G202000 · TK1151

Peroxisome0.036

Rank 4 · TkA06G202000 · TK1151

Nucleus0.021

Rank 5 · TkA06G202000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00278Orn_DAP_Arg_deC92-435 aa

PF02784Orn_Arg_deC_N98-344 aa

PF01168Ala_racemase_N98-299 aa

PF03340Pox_Rif166-213 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G202000	`PF00278`	Orn_DAP_Arg_deC	92	435	4.9e-22	78.7
TkA06G202000	`PF02784`	Orn_Arg_deC_N	98	344	2.2e-48	165.5
TkA06G202000	`PF01168`	Ala_racemase_N	98	299	1.2e-05	25.9
TkA06G202000	`PF03340`	Pox_Rif	166	213	0.049	12.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94A94`	Arabidopsis thaliana	sp\|Q94A94\|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic	76.700%	Swiss-Prot	High
`Q949X7`	Arabidopsis thaliana	sp\|Q949X7\|DCDA1_ARATH Diaminopimelate decarboxylase 1, chloroplastic	79.200%	Swiss-Prot	High
`Q6ZG77`	Oryza sativa subsp. japonica	sp\|Q6ZG77\|DCDA_ORYSJ Probable diaminopimelate decarboxylase, chloroplastic	78.600%	Swiss-Prot	High

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