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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G197200
Reference: TK1151 Chr: Chr06 Coordinates: 51313445-51323671 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1547 bp · TkA06G197200|TK1151|cDNA

CAGAGACCAGATCCCAATAGACACCCCTCGATTTTCCTTATTTAATCTAAATTATACCTTCAACCCTATCGAGCATCAATGGCGATTGACGCTATTTGCTGTAAATTATAGCTGAAATACAAGTATCTAACTTCTCTTTTTAGCCGTCGTACAAGAGTTTCACGATTGTGATGGATGCTAAAACGTCGGCTAAATCCAGTAACATTGTTAACGATCAGTCTCCCTCTCAACAGGACAACGCACCTGCACAAAAGTCGAGC...

CDS

Download CDS FASTA

1386 bp · TkA06G197200|TK1151|CDS

ATGGATGCTAAAACGTCGGCTAAATCCAGTAACATTGTTAACGATCAGTCTCCCTCTCAACAGGACAACGCACCTGCACAAAAGTCGAGCAAAGTGCCTTTCATCATAGGTGTTGCTGGCGGAACGGCATCCGGAAAAACAACTGTCTGCAATGTGATCATATCAAGACTCCATGATCAAAGAGTTTCCCTTATCAATCAAGATTCATTTTATCGTTCTTTGAGTGATGAACAATCAGCAAATGCACAAGATTACAATTT...

Protein

Download Protein FASTA

461 aa · TkA06G197200|TK1151|PROTEIN

MDAKTSAKSSNIVNDQSPSQQDNAPAQKSSKVPFIIGVAGGTASGKTTVCNVIISRLHDQRVSLINQDSFYRSLSDEQSANAQDYNFDHPDSFNTELLLSCMERLKKGQPANIPDYDYKIHKNSGPGRMVNPSDVIILEGILVLHDTRVRDLMSMKIFVDSDSDVRLGRRIKRDTVERGRNIQYVLDQYDRHVKPSFEEFILPSKKHADIIIPRGSDNDVAIDLIVQHIRTKLGQHDLCKIYQNLFVIPSTFQIRGMHTL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G197200
TK1151 IDTkA06G197200
OH-1004 IDLXL04_023906
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G197200
LocationChr06:51313445-51323671 (-)
DescriptionSimilar to UKL5: Uridine kinase-like protein 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27440 Involved in the pyrimidine salvage pathway. No verified direct reference in this release
At1g55810 Involved in the pyrimidine salvage pathway. No verified direct reference in this release
At4g26510 Involved in the pyrimidine salvage pathway. No verified direct reference in this release
At5g40870 Involved in the pyrimidine salvage pathway (Probable).
Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana.2007 · DOI: 10.1007/s11103-006-9101-3
Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis.2011 · DOI: 10.1105/tpc.111.085829
Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis.2019 · DOI: 10.1104/pp.19.00329
At3g27190 Involved in the pyrimidine salvage pathway.
Plastid uridine salvage activity is required for photoassimilate allocation and partitioning in Arabidopsis.2011 · DOI: 10.1105/tpc.111.085829
Pyrimidine Salvage: Physiological Functions and Interaction with Chloroplast Biogenesis.2019 · DOI: 10.1104/pp.19.00329

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023906 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process Biological Process
GO:0044206 UMP salvage Biological Process
GO:0044211 CTP salvage Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:1901141 regulation of lignin biosynthetic process Biological Process
GO:2000904 regulation of starch metabolic process Biological Process
GO:2001006 regulation of cellulose biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004845 uracil phosphoribosyltransferase activity Molecular Function
GO:0004849 uridine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G55810
ath:AT3G27190
ath:AT3G27440
ath:AT4G26510
ath:AT5G40870
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.560
Rank 1 · TkA06G197200 · TK1151
Nucleus0.328
Rank 2 · TkA06G197200 · TK1151
Mitochondrion0.178
Rank 3 · TkA06G197200 · TK1151
Peroxisome0.050
Rank 4 · TkA06G197200 · TK1151
Cell membrane0.044
Rank 5 · TkA06G197200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00437T2SSE19-63 aa
PF06414Zeta_toxin27-70 aa
PF00485PRK35-221 aa
PF01121CoaE35-79 aa
PF13238AAA_1836-178 aa
PF02224Cytidylate_kin36-74 aa
PF03029ATP_bind_138-69 aa
PF13207AAA_1740-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G197200PF00437T2SSE19630.1311.6
TkA06G197200PF06414Zeta_toxin27700.01515.5
TkA06G197200PF00485PRK352212.6e-47161.9
TkA06G197200PF01121CoaE35797.3e-0626.5
TkA06G197200PF13238AAA_18361789.7e-0523.6
TkA06G197200PF02224Cytidylate_kin36740.04514.2
TkA06G197200PF03029ATP_bind_138690.0613.8
TkA06G197200PF13207AAA_17401740.05914.4
TkA06G197200PF00156Pribosyltran48800.005516.8
TkA06G197200PF02188GoLoco55640.2711.4
TkA06G197200PF01121CoaE1362017.3e-0626.5
TkA06G197200PF02224Cytidylate_kin1471790.04514.2
TkA06G197200PF14681UPRTase2494501.7e-73247.2
TkA06G197200PF00485PRK2582712.6e-47161.9
TkA06G197200PF24390PRTase-CE3124330.0002821.6
TkA06G197200PF00156Pribosyltran3574070.005516.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTY6Arabidopsis thalianasp|Q9LTY6|UKL5_ARATH Uridine kinase-like protein 578.100%Swiss-ProtHigh
Q8VYB2Arabidopsis thalianasp|Q8VYB2|UKL3_ARATH Uridine kinase-like protein 375.000%Swiss-ProtHigh
O65583Arabidopsis thalianasp|O65583|UKL4_ARATH Uridine kinase-like protein 475.700%Swiss-ProtHigh
Q9FKS0Arabidopsis thalianasp|Q9FKS0|UKL1_ARATH Uridine/cytidine kinase UKL1, chloroplastic71.700%Swiss-ProtHigh
Q9LK34Arabidopsis thalianasp|Q9LK34|UKL2_ARATH Uridine/cytidine kinase UKL1, chloroplastic73.100%Swiss-ProtHigh

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