TkA06G191660 | RubberDandelionOmics

Gene overview

TkA06G191660

Reference: TK1151 Chr: Chr06 Coordinates: 49995452-50002405 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4444 bp · TkA06G191660|TK1151|cDNA

CAAGCATCATCTTGTAATAACTATAATTCATTATGTGTATCGTTTTATGTTTGGTTTGTTTGCTTGTCGAAACGGCAATAGGTCAGCAAGCTAACTACTCTCCTAACAAATATACAATAATATACTCATGTGCATATAATTATATCCATATCTACAAGACTAATACATTAACCAGTGATTAATGGCGGAAGTAAGAGATCTCTGCAACTTCTGACCAAAGTAAGGAATTTTGTCTACTCTGTCTTCTTGTATTTTTGCTT...

CDS

Download CDS FASTA

3558 bp · TkA06G191660|TK1151|CDS

ATGCCGTTTGGTAGGCATGAGAGGATTCGGTTTAGTAAAATTTATTCTCTTTCGTGTTTCCGACCTTCAACAAAAGATGAACACGGTCAAATCGGGCAAAAAGGCTACTCTAGAGTTGTATATTGCAATGATCCCGAGAATCCAGAGGCACTTCAGCTCAGATACCGGGGTAATTATGTTTCGACGACTAAGTATACGGCCGTCAATTTCATTCCGAAGTCTCTGTTTGAACAATTTAGGCGGGTTGCAAATATTTACTT...

Protein

Download Protein FASTA

1185 aa · TkA06G191660|TK1151|PROTEIN

MPFGRHERIRFSKIYSLSCFRPSTKDEHGQIGQKGYSRVVYCNDPENPEALQLRYRGNYVSTTKYTAVNFIPKSLFEQFRRVANIYFLVVACVSFSPLAPFRASSILFPLLVVIGATMAKEGVEDWRRRKQDIKANNRKIHVYRDHSFSQSKWKDLRVGDLVKVYKDEYFPSDLLLLSSSYPDGICYVETMNLDGETNLKLKHAFDFTSSLHDDSSFHHFKAVVKCEDPNEDLYSFVGSLSYNGEQHPLSLQQILLRDSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G191660`
TK1151 ID	TkA06G191660
OH-1004 ID	LXL04_023977
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G191660

Location Chr06:49995452-50002405 (-)

Description Similar to ALA8: Probable phospholipid-transporting ATPase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27870`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g68710`	Involved in transport of phospholipids.	No verified direct reference in this release
`At3g25610`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g26130`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g13210`	Involved in transport of phospholipids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0045332 phospholipid translocation Biological Process

GO:1901703 protein localization involved in auxin polar transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0090554 phosphatidylcholine floppase activity Molecular Function

GO:0140326 ATPase-coupled intramembrane lipid transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G13210

ath:AT1G26130

ath:AT1G68710

ath:AT3G25610

ath:AT3G27870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.391

Rank 1 · TkA06G191660 · TK1151

Endoplasmic reticulum0.238

Rank 2 · TkA06G191660 · TK1151

Golgi apparatus0.224

Rank 3 · TkA06G191660 · TK1151

Cytoplasm0.207

Rank 4 · TkA06G191660 · TK1151

Lysosome / Vacuole0.174

Rank 5 · TkA06G191660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209PhoLip_ATPase_N40-102 aa

PF00122E1-E2_ATPase137-202 aa

PF00702Hydrolase419-528 aa

PF13246Cation_ATPase514-710 aa

PF08282Hydrolase_3568-667 aa

PF00702Hydrolase662-738 aa

PF08282Hydrolase_3713-740 aa

PF00702Hydrolase816-877 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G191660	`PF16209`	PhoLip_ATPase_N	40	102	1.9e-22	79.5
TkA06G191660	`PF00122`	E1-E2_ATPase	137	202	0.0023	18.4
TkA06G191660	`PF00702`	Hydrolase	419	528	2.3e-13	51.7
TkA06G191660	`PF13246`	Cation_ATPase	514	710	6.1e-22	79.0
TkA06G191660	`PF08282`	Hydrolase_3	568	667	3e-05	24.6
TkA06G191660	`PF00702`	Hydrolase	662	738	2.3e-13	51.7
TkA06G191660	`PF08282`	Hydrolase_3	713	740	3e-05	24.6
TkA06G191660	`PF00702`	Hydrolase	816	877	2.3e-13	51.7
TkA06G191660	`PF08282`	Hydrolase_3	857	883	3e-05	24.6
TkA06G191660	`PF16212`	PhoLip_ATPase_C	891	1141	3.8e-91	306.0
TkA06G191660	`PF16209`	PhoLip_ATPase_N	1123	1136	1.9e-22	79.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LK90`	Arabidopsis thaliana	sp\|Q9LK90\|ALA8_ARATH Probable phospholipid-transporting ATPase 8	71.500%	Swiss-Prot	High
`Q9SX33`	Arabidopsis thaliana	sp\|Q9SX33\|ALA9_ARATH Putative phospholipid-transporting ATPase 9	64.700%	Swiss-Prot	High
`Q9LI83`	Arabidopsis thaliana	sp\|Q9LI83\|ALA10_ARATH Phospholipid-transporting ATPase 10	64.400%	Swiss-Prot	High
`P57792`	Arabidopsis thaliana	sp\|P57792\|ALA12_ARATH Probable phospholipid-transporting ATPase 12	63.100%	Swiss-Prot	High
`Q9SAF5`	Arabidopsis thaliana	sp\|Q9SAF5\|ALA11_ARATH Probable phospholipid-transporting ATPase 11	63.500%	Swiss-Prot	High

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