LXL04_023977 | RubberDandelionOmics

Gene overview

LXL04_023977

Reference: OH-1004 Chr: Chr05 Coordinates: 76770570-76776770 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3558 bp · LXL04_023977|LXL04_023977|OH1004|cDNA

ATGCCGTTTGGTAGGCATGAGAGGATTCGGTTTAGTAAAATTTATTCTCTTTCGTGTTTCCGACCTTCAACAAAAGATGAACACGGTCAAATCGGGCAAAAAGGCTACTCTAGAGTTGTATATTGCAATGATCCCGAGAATCCAGAGGCACTTCAGCTCAGATACCGGGGTAATTATGTTTCGACGACTAAGTATACGGCCGTCAATTTCATTCCGAAGTCTCTGTTTGAACAATTTAGGCGGGTTGCAAATATTTACTT...

CDS

Download CDS FASTA

3558 bp · LXL04_023977|LXL04_023977|OH1004|CDS

ATGCCGTTTGGTAGGCATGAGAGGATTCGGTTTAGTAAAATTTATTCTCTTTCGTGTTTCCGACCTTCAACAAAAGATGAACACGGTCAAATCGGGCAAAAAGGCTACTCTAGAGTTGTATATTGCAATGATCCCGAGAATCCAGAGGCACTTCAGCTCAGATACCGGGGTAATTATGTTTCGACGACTAAGTATACGGCCGTCAATTTCATTCCGAAGTCTCTGTTTGAACAATTTAGGCGGGTTGCAAATATTTACTT...

Protein

Download Protein FASTA

1185 aa · LXL04_023977|LXL04_023977|OH1004|PROTEIN

MPFGRHERIRFSKIYSLSCFRPSTKDEHGQIGQKGYSRVVYCNDPENPEALQLRYRGNYVSTTKYTAVNFIPKSLFEQFRRVANIYFLVVACVSFSPLAPFRASSILFPLLVVIGATMAKEGVEDWRRRKQDIKANNRKIHVYRDHSFSQSKWKDLRVGDLVKVYKDEYFPSDLLLLSSSYPDGICYVETMNLDGETNLKLKHAFDFTSSLHDDSSFHHFKAVVKCEDPNEDLYSFVGSLSYNGEQHPLSLQQILLRDSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_023977`
TK1151 ID	TkA06G191660
OH-1004 ID	LXL04_023977
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_023977

Location Chr05:76770570-76776770 (+)

Description Similar to ALA8: Probable phospholipid-transporting ATPase 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g27870`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g68710`	Involved in transport of phospholipids.	No verified direct reference in this release
`At3g25610`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g26130`	Involved in transport of phospholipids.	No verified direct reference in this release
`At1g13210`	Involved in transport of phospholipids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023977 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045332 phospholipid translocation Biological Process

GO:1901703 protein localization involved in auxin polar transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0090554 phosphatidylcholine floppase activity Molecular Function

GO:0140326 ATPase-coupled intramembrane lipid transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G13210

ath:AT1G26130

ath:AT1G68710

ath:AT3G25610

ath:AT3G27870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.391

Rank 1 · LXL04_023977 · OH-1004

Endoplasmic reticulum0.238

Rank 2 · LXL04_023977 · OH-1004

Golgi apparatus0.224

Rank 3 · LXL04_023977 · OH-1004

Cytoplasm0.207

Rank 4 · LXL04_023977 · OH-1004

Lysosome / Vacuole0.174

Rank 5 · LXL04_023977 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209.11PhoLip_ATPase_N40-102 aa

PF13246.13Cation_ATPase514-710 aa

PF00702.33Hydrolase662-738 aa

PF16212.12PhoLip_ATPase_C891-1141 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_023977	`PF16209.11`	PhoLip_ATPase_N	40	102	1.9e-22	79.5
LXL04_023977	`PF13246.13`	Cation_ATPase	514	710	6.1e-22	79.0
LXL04_023977	`PF00702.33`	Hydrolase	662	738	2.3e-13	51.7
LXL04_023977	`PF16212.12`	PhoLip_ATPase_C	891	1141	3.8e-91	306.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LK90`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 8	71.878%	Swiss-Prot	strong database homology
`Q9SX33`	Arabidopsis thaliana	Putative phospholipid-transporting ATPase 9	64.212%	Swiss-Prot	strong database homology
`Q9LI83`	Arabidopsis thaliana	Phospholipid-transporting ATPase 10	63.925%	Swiss-Prot	strong database homology
`P57792`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 12	63.021%	Swiss-Prot	strong database homology
`Q9SAF5`	Arabidopsis thaliana	Probable phospholipid-transporting ATPase 11	62.862%	Swiss-Prot	strong database homology

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