TkA06G090140 | RubberDandelionOmics

Gene overview

TkA06G090140

Reference: TK1151 Chr: Chr06 Coordinates: 23983095-23983535 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

360 bp · TkA06G090140|TK1151|cDNA

ATGATATCCATGTCTCGTATGAGAGGAACACCAGGGTACATTGCTCCTGAGATGTATTCTAGAAGTTTTGGGCCAGTATCTCATAAATCAGATGTTTATAGTTATGGGATGATGATTTTGGAAATGGTTGAATTAGACGAACAACTTGGACTACATACAAGTATAAGTGATGAAGAAAATGATATGGCAAGAAAAATGATCATTGTTGGCTTGTGGTGCATACAAACTAATCCCTTAAACCGCCCAACAATCACCAAGGC...

CDS

Download CDS FASTA

360 bp · TkA06G090140|TK1151|CDS

ATGATATCCATGTCTCGTATGAGAGGAACACCAGGGTACATTGCTCCTGAGATGTATTCTAGAAGTTTTGGGCCAGTATCTCATAAATCAGATGTTTATAGTTATGGGATGATGATTTTGGAAATGGTTGAATTAGACGAACAACTTGGACTACATACAAGTATAAGTGATGAAGAAAATGATATGGCAAGAAAAATGATCATTGTTGGCTTGTGGTGCATACAAACTAATCCCTTAAACCGCCCAACAATCACCAAGGC...

Protein

Download Protein FASTA

119 aa · TkA06G090140|TK1151|PROTEIN

MISMSRMRGTPGYIAPEMYSRSFGPVSHKSDVYSYGMMILEMVELDEQLGLHTSISDEENDMARKMIIVGLWCIQTNPLNRPTITKALEMLEGDMTSLEIPPKPYLYSPSRSVGSSVTD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G090140`
TK1151 ID	TkA06G090140
OH-1004 ID	LXL04_020183
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	52.100
Protein coverage (%)	TK1151 94.118 / OH-1004 16.144 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G090140

Location Chr06:23983095-23983535 (+)

Description Similar to LRK10L-2.8: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g38280`	Possesses kinase activity in vitro.	The PR5K receptor protein kinase from Arabidopsis thaliana is structurally related to a family of plant defense proteins.1996 · DOI: 10.1073/pnas.93.6.2598
`At1g67000`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8.	No verified direct reference in this release
`At5g38260`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1.	No verified direct reference in this release
`At5g38250`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020183 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G66930

ath:AT1G67000

ath:AT5G38260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.485

Rank 1 · TkA06G090140 · TK1151

Cytoplasm0.399

Rank 2 · TkA06G090140 · TK1151

Nucleus0.258

Rank 3 · TkA06G090140 · TK1151

Endoplasmic reticulum0.052

Rank 4 · TkA06G090140 · TK1151

Golgi apparatus0.049

Rank 5 · TkA06G090140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase4-82 aa

PF07714PK_Tyr_Ser-Thr12-47 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G090140	`PF00069`	Pkinase	4	82	7.9e-08	32.7
TkA06G090140	`PF07714`	PK_Tyr_Ser-Thr	12	47	5.5e-05	23.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FF29`	Arabidopsis thaliana	sp\|Q9FF29\|PR5K_ARATH PR5-like receptor kinase	45.300%	Swiss-Prot	Medium
`Q3ECH2`	Arabidopsis thaliana	sp\|Q3ECH2\|LRL28_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8	42.700%	Swiss-Prot	Medium
`Q9FF31`	Arabidopsis thaliana	sp\|Q9FF31\|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1	42.600%	Swiss-Prot	Medium
`F4KA51`	Arabidopsis thaliana	sp\|F4KA51\|LRL23_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3	42.800%	Swiss-Prot	Medium

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