LXL04_020183 | RubberDandelionOmics

Gene overview

LXL04_020183

Reference: OH-1004 Chr: Chr04 Coordinates: 54938011-54948170 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2586 bp · LXL04_020183|LXL04_020183|OH1004|cDNA

ATGGTTCGAGTTACCCCAACTGCCGTTCCTACAGATGCGGGAACATCAATATCAGCTATCCATTTTGGAGGATCGGCAGTGAAACCACCACCCAGCTCTGCGGTTATCCTGGTTTTGGAATCAACTGTTCCTACAACGAGTATCGTCCTCATAGACGATGACGTTTCCAACGCCGTCTCAATCATGGATTGCCCGAGGGTGCGCCATAACATTACCATCGGAACTTTGCCTTTCGTTTTCGTGAATCAGAACGTTAACCT...

CDS

Download CDS FASTA

2586 bp · LXL04_020183|LXL04_020183|OH1004|CDS

ATGGTTCGAGTTACCCCAACTGCCGTTCCTACAGATGCGGGAACATCAATATCAGCTATCCATTTTGGAGGATCGGCAGTGAAACCACCACCCAGCTCTGCGGTTATCCTGGTTTTGGAATCAACTGTTCCTACAACGAGTATCGTCCTCATAGACGATGACGTTTCCAACGCCGTCTCAATCATGGATTGCCCGAGGGTGCGCCATAACATTACCATCGGAACTTTGCCTTTCGTTTTCGTGAATCAGAACGTTAACCT...

Protein

Download Protein FASTA

861 aa · LXL04_020183|LXL04_020183|OH1004|PROTEIN

MVRVTPTAVPTDAGTSISAIHFGGSAVKPPPSSAVILVLESTVPTTSIVLIDDDVSNAVSIMDCPRVRHNITIGTLPFVFVNQNVNLSFHFNCTGVPDFASEIPCLSSPTNKSCVNRVDSEPQNFNWEEFSCDEEVVTMAFDVFGSESRLGTEFIGALRAGFELSWWKTEDCEKCEQSRGMCGYNKNTTEFMCFCSDGTATLEHCNDIQRFRDCSTKFYTCGEATTYISYPFWGNERPSYCGLQGFRLTCREDNITTVQI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_020183`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_020183

Location Chr04:54938011-54948170 (+)

Description Similar to LRK10L-2.8: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67000`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8.	No verified direct reference in this release
`At1g66930`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7.	No verified direct reference in this release
`At5g38260`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1.	No verified direct reference in this release
`At5g38250`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3.	No verified direct reference in this release
`At5g38240`	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020183 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G66930

ath:AT1G67000

ath:AT5G38260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.841

Rank 1 · LXL04_020183 · OH-1004

Cytoplasm0.102

Rank 2 · LXL04_020183 · OH-1004

Nucleus0.078

Rank 3 · LXL04_020183 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_020183 · OH-1004

Lysosome / Vacuole0.024

Rank 5 · LXL04_020183 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14380.12WAK_assoc118-198 aa

PF13947.12GUB_WAK_bind214-279 aa

PF14380.12WAK_assoc358-433 aa

PF07714.24PK_Tyr_Ser-Thr524-797 aa

PF00069.32Pkinase526-795 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_020183	`PF14380.12`	WAK_assoc	118	198	2.4e-29	102.7
LXL04_020183	`PF13947.12`	GUB_WAK_bind	214	279	4e-14	53.4
LXL04_020183	`PF14380.12`	WAK_assoc	358	433	2.4e-29	102.7
LXL04_020183	`PF07714.24`	PK_Tyr_Ser-Thr	524	797	1.7e-45	156.1
LXL04_020183	`PF00069.32`	Pkinase	526	795	5.8e-46	157.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3ECH2`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8	38.573%	Swiss-Prot	moderate database homology
`F4HQ23`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7	38.350%	Swiss-Prot	moderate database homology
`Q9FF31`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1	39.225%	Swiss-Prot	moderate database homology
`F4KA51`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3	39.938%	Swiss-Prot	moderate database homology
`F4KA50`	Arabidopsis thaliana	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.2	39.342%	Swiss-Prot	moderate database homology

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