TkA06G070400 | RubberDandelionOmics

Gene overview

TkA06G070400

Reference: TK1151 Chr: Chr06 Coordinates: 18863141-18865897 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2481 bp · TkA06G070400|TK1151|cDNA

AAATAATTAGGAAATCAATCATCTTATGCCCTTCACCTTTTTGTTTTCATTTGAATCCACTGTACCAAACTTAGTATAGAACTGAAGCGAAGTTCAGGAAGATCAGTTTCAAAGACGAAAACAGTTCAGCAAACAACCACCGATTTTCATTTCTCGAATTGGGGAAAGAAGAGGCGGGAAAATGAGTGGAGTTGTGCTGGTGGCTGTTGCTGCCGCCGTCGGTAACTTAATTCAAGGATGGGATAACGCCACTATTGCCG...

CDS

Download CDS FASTA

1593 bp · TkA06G070400|TK1151|CDS

ATGCTTGAAGCTAAACAGGTGTTGCAGAGATTACGTGGAAGAGAAGATGTTGCAGGTGAGTTGGCTTTACTGGTTGAAGGACTTGAAGTTGGGGGAGATGCAACTATTGAAGAGTACGCAATCGGCCCTGTAAATGGAATTGAACATGATCAAACTATCACAGAAGCTGATAAAATTAGGTTATACGGTCATGATGACGGGGTTTCTCTGATTGCTCGACCGATCACCGGAAAAAGTATGATCGGAATTGCTGGTAGCGC...

Protein

Download Protein FASTA

530 aa · TkA06G070400|TK1151|PROTEIN

MLEAKQVLQRLRGREDVAGELALLVEGLEVGGDATIEEYAIGPVNGIEHDQTITEADKIRLYGHDDGVSLIARPITGKSMIGIAGSAGVPFVDPLVSLFSSVHEKLPDVIGSKGSMLFPHFGSMFSVTGNQGKNEDWDEESVGGREGDDYQSDVHGTDIDDNIQSPLISRQTTTLENDMIQPASSIISIRNNNDVHIAGEQVNSTDIGGGWQLAWKWPEKDVEDGKTKGGFKRIYLHQENGAGAHRGSLLSLAGADMPAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G070400`
TK1151 ID	TkA06G070400
OH-1004 ID	LXL04_025276
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 72.902 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G070400

Location Chr06:18863141-18865897 (-)

Description Similar to MSSP2: Monosaccharide-sensing protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35300`	Sugar proton-coupled antiporter which contributes to vacuolar sugar import (e.g. monosaccharides including glucose, sucrose and fructose), particularly during stress responses (e.g. in response to cold).	Molecular identification and physiological characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport.2006 · DOI: 10.1105/tpc.106.047290 Proton-driven sucrose symport and antiport are provided by the vacuolar transporters SUC4 and TMT1/2.2011 · DOI: 10.1111/j.1365-313x.2011.04672.x
`At1g20840`	Sugar proton-coupled antiporter which contributes to vacuolar sugar import (e.g. monosaccharides including glucose, sucrose and fructose), particularly during stress responses (e.g. in response to cold).	Molecular identification and physiological characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport.2006 · DOI: 10.1105/tpc.106.047290 Increased activity of the vacuolar monosaccharide transporter TMT1 alters cellular sugar partitioning, sugar signaling, and seed yield in Arabidopsis.2010 · DOI: 10.1104/pp.110.162040 Proton-driven sucrose symport and antiport are provided by the vacuolar transporters SUC4 and TMT1/2.2011 · DOI: 10.1111/j.1365-313x.2011.04672.x
`At3g51490`	Sugar proton-coupled antiporter which contributes to vacuolar sugar import (e.g. monosaccharides including glucose,sucrose and fructose), particularly during stress responses (e.g. in response to cold).	Molecular identification and physiological characterization of a novel monosaccharide transporter from Arabidopsis involved in vacuolar sugar transport.2006 · DOI: 10.1105/tpc.106.047290
`At5g17010`	D-xylose-proton symporter-like 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025276 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009624 response to nematode Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0009750 response to fructose Biological Process

GO:0015798 myo-inositol transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:1902074 response to salt Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G20840

ath:AT2G35740

ath:AT3G51490

ath:AT4G35300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.387

Rank 1 · TkA06G070400 · TK1151

Golgi apparatus0.199

Rank 2 · TkA06G070400 · TK1151

Cytoplasm0.193

Rank 3 · TkA06G070400 · TK1151

Cell membrane0.189

Rank 4 · TkA06G070400 · TK1151

Endoplasmic reticulum0.145

Rank 5 · TkA06G070400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083Sugar_tr3-29 aa

PF07690MFS_1298-465 aa

PF00083Sugar_tr302-523 aa

PF07690MFS_1349-512 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G070400	`PF00083`	Sugar_tr	3	29	1.6e-41	143.4
TkA06G070400	`PF07690`	MFS_1	298	465	4.7e-07	29.8
TkA06G070400	`PF00083`	Sugar_tr	302	523	1.6e-41	143.4
TkA06G070400	`PF07690`	MFS_1	349	512	4.7e-07	29.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LPQ8`	Arabidopsis thaliana	sp\|Q8LPQ8\|MSSP2_ARATH Monosaccharide-sensing protein 2	62.300%	Swiss-Prot	High
`Q96290`	Arabidopsis thaliana	sp\|Q96290\|MSSP1_ARATH Monosaccharide-sensing protein 1	52.500%	Swiss-Prot	High
`Q9SD00`	Arabidopsis thaliana	sp\|Q9SD00\|MSSP3_ARATH Monosaccharide-sensing protein 3	52.000%	Swiss-Prot	High
`Q6AWX0`	Arabidopsis thaliana	sp\|Q6AWX0\|XYLL2_ARATH D-xylose-proton symporter-like 2	32.600%	Swiss-Prot	Low

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