TkA06G069760 | RubberDandelionOmics

Gene overview

TkA06G069760

Reference: TK1151 Chr: Chr06 Coordinates: 18661320-18662708 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1242 bp · TkA06G069760|TK1151|cDNA

ATGTCAAATTACTTATGTGAAGAGTTGATAGTTGACATCTTCACAAGACTACCTTCCAAATCCCTCTTCCGATTTAGATCAATCTCTAAATCATTACGTTCTTGTATCGAAAGTCCCAGTTTCATCCGCATGCATATTTCTCGATCCCCACAAAGACGTGTCATCACACACAGAGTTACTCCTAAATACGTAGAAGAATATGGCGTTGAGGCCTTTTGGACGTTACATGAACAAAAACAATTTCCATTGTGCCCCATACG...

CDS

Download CDS FASTA

1242 bp · TkA06G069760|TK1151|CDS

ATGTCAAATTACTTATGTGAAGAGTTGATAGTTGACATCTTCACAAGACTACCTTCCAAATCCCTCTTCCGATTTAGATCAATCTCTAAATCATTACGTTCTTGTATCGAAAGTCCCAGTTTCATCCGCATGCATATTTCTCGATCCCCACAAAGACGTGTCATCACACACAGAGTTACTCCTAAATACGTAGAAGAATATGGCGTTGAGGCCTTTTGGACGTTACATGAACAAAAACAATTTCCATTGTGCCCCATACG...

Protein

Download Protein FASTA

413 aa · TkA06G069760|TK1151|PROTEIN

MSNYLCEELIVDIFTRLPSKSLFRFRSISKSLRSCIESPSFIRMHISRSPQRRVITHRVTPKYVEEYGVEAFWTLHEQKQFPLCPIRANIGITPLKFPHIHDRIVGSCNGILCLFNYKKSTISLWNPSIMSQIIVPDCPLRCFYLGQIGFGFDPITNDHKIVCAHHEYVETRENAFVYSMKMGSWCPIASPFPITQHCEVLSNAFYVNGVLHWVVERFIERDYIMTFDLCTHEFGMIDLPELGELKELLAIQGCLGVISS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G069760`
TK1151 ID	TkA06G069760
OH-1004 ID	LXL04_025292
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	55.400
Protein coverage (%)	TK1151 76.755 / OH-1004 50.639 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G069760

Location Chr06:18661320-18662708 (+)

Description Similar to At3g06240: F-box/kelch-repeat protein At3g06240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16210`	Putative F-box protein At3g16210.	No verified direct reference in this release
`At3g07870`	F-box protein At3g07870.	No verified direct reference in this release
`At3g52320`	Putative F-box protein At3g52320.	No verified direct reference in this release
`At1g53360`	Putative F-box protein At1g53360.	No verified direct reference in this release
`At1g12870`	Putative F-box/kelch-repeat protein At1g12870.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025292 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G47790

ath:AT3G06240

ath:AT3G10240

ath:AT3G16210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.518

Rank 1 · TkA06G069760 · TK1151

Nucleus0.449

Rank 2 · TkA06G069760 · TK1151

Cell membrane0.113

Rank 3 · TkA06G069760 · TK1151

Endoplasmic reticulum0.079

Rank 4 · TkA06G069760 · TK1151

Mitochondrion0.044

Rank 5 · TkA06G069760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box5-42 aa

PF12937F-box-like7-41 aa

PF08268FBA_3103-261 aa

PF07734FBA_1103-240 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G069760	`PF00646`	F-box	5	42	2.1e-07	31.3
TkA06G069760	`PF12937`	F-box-like	7	41	0.0011	19.5
TkA06G069760	`PF08268`	FBA_3	103	261	3e-18	66.6
TkA06G069760	`PF07734`	FBA_1	103	240	5.6e-12	46.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LU24`	Arabidopsis thaliana	sp\|Q9LU24\|FB145_ARATH Putative F-box protein At3g16210	28.300%	Swiss-Prot	Low
`Q9SFC7`	Arabidopsis thaliana	sp\|Q9SFC7\|FB135_ARATH F-box protein At3g07870	24.600%	Swiss-Prot	Low
`Q9FT50`	Arabidopsis thaliana	sp\|Q9FT50\|FB202_ARATH Putative F-box protein At3g52320	24.200%	Swiss-Prot	Low
`Q3ECR3`	Arabidopsis thaliana	sp\|Q3ECR3\|FB305_ARATH Putative F-box protein At1g53360	24.700%	Swiss-Prot	Low
`Q9LPW2`	Arabidopsis thaliana	sp\|Q9LPW2\|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870	21.500%	Swiss-Prot	Low

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