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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G063140
Reference: TK1151 Chr: Chr06 Coordinates: 17037671-17039997 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2063 bp · TkA06G063140|TK1151|cDNA

AAAAAAATTAAATTAGAGTTTCGATGATATCTCCACTTAAACGAGAAATCCCAACCATCCCATCACCGCGTTCGAGAATGGAGCAAATCCATGGGTATATGTGATCTTTCAACTGAATCAAAGAAGTTTCTTGATGTACCCTACATGATTAAATTTTAGACCATATCAGCAATCGAAGACGTGTAGCAACTCACGAAGCTAACGATGCAAACCCTAACATAAGTCCAGTTCTCAAATGGCGATCAGATATACGCATGATG...

CDS

Download CDS FASTA

1506 bp · TkA06G063140|TK1151|CDS

ATGTTCGGCAAAGCCATGAAACGTGGTTACAAACCTGATTGTGCTACATTCAACACTCTGATTCGGGGACTTTGTGCTGATGGCAGTCTCGATCAAGCACTCAAACTGTTCGACCAAATGCTAGCAAACGGGTTCCAACCTAACATTGTAACATATGGGACATTGATCAACGGAATGTGCAAATTGGGAAAAACTAGTGATGCTATTATCTTGCTCAAGAAGATAGAAGAAGAATCAGAGTGGGATAATTCACATGTTGT...

Protein

Download Protein FASTA

501 aa · TkA06G063140|TK1151|PROTEIN

MFGKAMKRGYKPDCATFNTLIRGLCADGSLDQALKLFDQMLANGFQPNIVTYGTLINGMCKLGKTSDAIILLKKIEEESEWDNSHVVIMYTTIIDTMCKNQQVTQALHLFHNMTEKGIIPNLVTYLCLMQGLCSFELPQEAKRLLDDMLTRKIFPNLQAFNILLTALCKLGLAIESHNFLAFMVERGMIPNTITYNTLINGYCMIQRIDIATHLFTHMTTHDVVSYNVLINGYCKIKEIEKAVGLFKEMSRKGIHPNVVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G063140
TK1151 IDTkA06G063140
OH-1004 IDLXL04_022289
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)60.300
Protein coverage (%)TK1151 23.154 / OH-1004 14.578
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G063140
LocationChr06:17037671-17039997 (-)
DescriptionSimilar to At1g12700: Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022289 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006396 RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0090615 mitochondrial mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G12300
ath:AT1G12700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.555
Rank 1 · TkA06G063140 · TK1151
Plastid0.111
Rank 2 · TkA06G063140 · TK1151
Cytoplasm0.100
Rank 3 · TkA06G063140 · TK1151
Nucleus0.065
Rank 4 · TkA06G063140 · TK1151
Peroxisome0.029
Rank 5 · TkA06G063140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N1-73 aa
PF17177PPR_long3-71 aa
PF13812PPR_35-57 aa
PF23276TPR_247-62 aa
PF12854PPR_18-40 aa
PF12921ATP1311-40 aa
PF13041PPR_212-61 aa
PF01535PPR16-45 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G063140PF29070MSC6_N1732.7e-2486.7
TkA06G063140PF17177PPR_long3711.2e-2694.1
TkA06G063140PF13812PPR_35575.9e-55183.9
TkA06G063140PF23276TPR_247621.3e-31110.0
TkA06G063140PF12854PPR_18401.9e-120393.0
TkA06G063140PF12921ATP1311401e-0835.8
TkA06G063140PF13041PPR_212614e-130424.6
TkA06G063140PF01535PPR16459.4e-96308.3
TkA06G063140PF10037MRP-S2716800.01215.4
TkA06G063140PF24760TPR_IF140_C17400.006717.5
TkA06G063140PF30397MalM_C17380.1512.8
TkA06G063140PF14689SPOB_a20410.01515.6
TkA06G063140PF13428TPR_1420430.01716.4
TkA06G063140PF14559TPR_1926770.02315.8
TkA06G063140PF08579RPM227595.4e-0524.3
TkA06G063140PF21374WsaF_N28640.05114.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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