TkA06G056790 | RubberDandelionOmics

Gene overview

TkA06G056790

Reference: TK1151 Chr: Chr06 Coordinates: 15303692-15307470 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1876 bp · TkA06G056790|TK1151|cDNA

GTATCCCCCCATCCCATCTCATCCTCACATCATTTCACCGATAGTGCAATCACACCCACGGCGATTTCCCCCTAACTTTACAACACTATTAACTGAAAAATTAAAGAATCCCATCATCTCCATTCTCCCCCCTGTATCTCCTCTCTCTCACTCATCCCGTTTTTGCACTTAATGCCACCTCCAATCACCACCCATGGCTTCTTTTCCCCTAACTCTGCATTTCTTATCTCTAACGTCTCATCTTCAAACCCCTGATCAAA...

CDS

Download CDS FASTA

1365 bp · TkA06G056790|TK1151|CDS

ATGGGGTGTTGTGTATCCACAAGCAGTCACAGTACGTGTAGTAGCATGAGCGATGGAGAAATTGTCACCATGTGTGGCGTTTCAAAGAGAGCAAGAACAACATATTCCGACCACATGAACACCTTACAGAATATTACGTCTATACCCAATAGGATTTTTTCAAATGGGAAGAGTCAAAGTTCGTGTATTTTTACACAACAAGGTCGTAAAGGTGTAAATCAGGACGCCATGATTGTTTGGGAAGATTTTATGACGGAAGG...

Protein

Download Protein FASTA

454 aa · TkA06G056790|TK1151|PROTEIN

MGCCVSTSSHSTCSSMSDGEIVTMCGVSKRARTTYSDHMNTLQNITSIPNRIFSNGKSQSSCIFTQQGRKGVNQDAMIVWEDFMTEGLTFCGVFDGHGPQGHLVARKVRDTLPLKLFSFLDSHESKKKKSTGSNCCSRNSGLDIDVEIEDRVDSLWKDAFLKSYKSMDKELRSHPSVDCFCSGSTAVTIVKQGSNLFMGSIGDSRAIMASYDSNNSLVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G056790`
TK1151 ID	TkA06G056790
OH-1004 ID	LXL04_025481
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G056790

Location Chr06:15303692-15307470 (-)

Description Similar to At4g03415: Probable protein phosphatase 2C 52

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g03415`	Probable protein phosphatase 2C 52.	No verified direct reference in this release
`At1g03590`	May act as negative regulator of GCN5.	No verified direct reference in this release
`At1g16220`	Probable protein phosphatase 2C 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0566200`	Probable protein phosphatase 2C 64.	No verified direct reference in this release
`Os08g0500300`	Probable protein phosphatase 2C 66.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G03590

ath:AT1G16220

ath:AT1G79630

ath:AT4G03415

dosa:Os07g0566200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.451

Rank 1 · TkA06G056790 · TK1151

Nucleus0.420

Rank 2 · TkA06G056790 · TK1151

Cell membrane0.171

Rank 3 · TkA06G056790 · TK1151

Golgi apparatus0.063

Rank 4 · TkA06G056790 · TK1151

Endoplasmic reticulum0.059

Rank 5 · TkA06G056790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481PP2C133-337 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G056790	`PF00481`	PP2C	133	337	5.6e-38	131.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GY60`	Arabidopsis thaliana	sp\|Q8GY60\|P2C52_ARATH Probable protein phosphatase 2C 52	68.100%	Swiss-Prot	High
`Q9LR65`	Arabidopsis thaliana	sp\|Q9LR65\|P2C01_ARATH Probable protein phosphatase 2C 1	64.500%	Swiss-Prot	High
`Q9SA22`	Arabidopsis thaliana	sp\|Q9SA22\|P2C06_ARATH Probable protein phosphatase 2C 6	48.100%	Swiss-Prot	Medium
`Q8H4S6`	Oryza sativa subsp. japonica	sp\|Q8H4S6\|P2C64_ORYSJ Probable protein phosphatase 2C 64	58.500%	Swiss-Prot	High
`Q6ZKL8`	Oryza sativa subsp. japonica	sp\|Q6ZKL8\|P2C66_ORYSJ Probable protein phosphatase 2C 66	50.200%	Swiss-Prot	High

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