LXL04_025481 | RubberDandelionOmics

Gene overview

LXL04_025481

Reference: OH-1004 Chr: Chr05 Coordinates: 112435612-112437796 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1365 bp · LXL04_025481|LXL04_025481|OH1004|cDNA

ATGGGGTGTTGTGTATCCACAAGCAGTCACAGTACGTGTAGTAGCATGAGCGATGGAGAAATTGTCACCATGTGTGGCGTTTCAAAGAGAGCAAGAACAACATATTCCGACCACATGAACACCTTACAGAATATTACGTCTATACCCAATAGGATTTTTTCAAATGGGAAGAGTCAAAGTTCGTGTATTTTTACACAACAAGGTCGTAAAGGTGTAAATCAGGACGCCATGATTGTTTGGGAAGATTTTATGACGGAAGG...

CDS

Download CDS FASTA

1365 bp · LXL04_025481|LXL04_025481|OH1004|CDS

ATGGGGTGTTGTGTATCCACAAGCAGTCACAGTACGTGTAGTAGCATGAGCGATGGAGAAATTGTCACCATGTGTGGCGTTTCAAAGAGAGCAAGAACAACATATTCCGACCACATGAACACCTTACAGAATATTACGTCTATACCCAATAGGATTTTTTCAAATGGGAAGAGTCAAAGTTCGTGTATTTTTACACAACAAGGTCGTAAAGGTGTAAATCAGGACGCCATGATTGTTTGGGAAGATTTTATGACGGAAGG...

Protein

Download Protein FASTA

454 aa · LXL04_025481|LXL04_025481|OH1004|PROTEIN

MGCCVSTSSHSTCSSMSDGEIVTMCGVSKRARTTYSDHMNTLQNITSIPNRIFSNGKSQSSCIFTQQGRKGVNQDAMIVWEDFMTEGLTFCGVFDGHGPQGHLVARKVRDTLPLKLFSFLDSHESKKKKSTGSNCCSRNSGLDIDVEIEDRVDSLWKDAFLKSYKSMDKELRSHPSVDCFCSGSTAVTIVKQGSNLFMGSIGDSRAIMASYDSNNSLVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVSRVWLPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_025481`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_025481

Location Chr05:112435612-112437796 (+)

Description Similar to At4g03415: Probable protein phosphatase 2C 52

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g03415`	Probable protein phosphatase 2C 52.	No verified direct reference in this release
`At1g03590`	May act as negative regulator of GCN5.	No verified direct reference in this release
`At1g16220`	Probable protein phosphatase 2C 6.	No verified direct reference in this release
`At1g79630`	Probable protein phosphatase 2C 18.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0566200`	Probable protein phosphatase 2C 64.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025481 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006470 protein dephosphorylation Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G03590

ath:AT1G16220

ath:AT1G79630

ath:AT4G03415

dosa:Os07g0566200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.454

Rank 1 · LXL04_025481 · OH-1004

Nucleus0.417

Rank 2 · LXL04_025481 · OH-1004

Cell membrane0.169

Rank 3 · LXL04_025481 · OH-1004

Golgi apparatus0.063

Rank 4 · LXL04_025481 · OH-1004

Endoplasmic reticulum0.059

Rank 5 · LXL04_025481 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C133-337 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_025481	`PF00481.27`	PP2C	133	337	5.4e-38	131.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GY60`	Arabidopsis thaliana	Probable protein phosphatase 2C 52	67.647%	Swiss-Prot	strong database homology
`Q9LR65`	Arabidopsis thaliana	Probable protein phosphatase 2C 1	64.681%	Swiss-Prot	strong database homology
`Q9SA22`	Arabidopsis thaliana	Probable protein phosphatase 2C 6	47.991%	Swiss-Prot	moderate database homology
`Q8RXZ4`	Arabidopsis thaliana	Probable protein phosphatase 2C 18	48.090%	Swiss-Prot	moderate database homology
`Q8H4S6`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 64	58.454%	Swiss-Prot	strong database homology

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