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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G047320
Reference: TK1151 Chr: Chr06 Coordinates: 12802434-12806009 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2331 bp · TkA06G047320|TK1151|cDNA

AAAACCCTCTAAATTCAATTCAACTACTTCACCTCTACCGGCCATTCATTTTACTCTCATTTCATCTGCTGAATCTCCATCACTAAGTCTTCACATTTCACAATGATGTTGCCTTCCATCATCATCTTCATCATCTTCATCATACTCCCAATTCTTTCTCTCGGTCAAGACATCCAACAGTTTCGCGACTGTTCAACCAAGTTCTACACTTGTGGTGAGGCAACCACATATCTCGGCTATCCTTTTTGGGGAAACGAACG...

CDS

Download CDS FASTA

1968 bp · TkA06G047320|TK1151|CDS

ATGATGTTGCCTTCCATCATCATCTTCATCATCTTCATCATACTCCCAATTCTTTCTCTCGGTCAAGACATCCAACAGTTTCGCGACTGTTCAACCAAGTTCTACACTTGTGGTGAGGCAACCACATATCTCGGCTATCCTTTTTGGGGAAACGAACGTCCTTCTCACTGTGGACTCCAGGGATTCCGACTTACTTGCAGAGAAGATAACGTAACCACTCTTCAGATCATGAACACGACATTCCGTGTCATTCGAATCGA...

Protein

Download Protein FASTA

655 aa · TkA06G047320|TK1151|PROTEIN

MMLPSIIIFIIFIILPILSLGQDIQQFRDCSTKFYTCGEATTYLGYPFWGNERPSHCGLQGFRLTCREDNVTTLQIMNTTFRVIRIDQNNSKVALVLDDLRGDEPACSLRQTDSINTTTFQYTLFSYVPNGSLILGLYFSCEEDVVRSIPTRKILNCSADEGDRWSFFENIPIPVRNRCERVIGVPVSMAAFDAFNRSETMSFEELLWQGFEMEYRVDGGGICSRCQSTGGTCGSYFNSSGPSCMCPDGFPRLTCFTSVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G047320
TK1151 IDTkA06G047320
OH-1004 IDLXL04_020183
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)94.900
Protein coverage (%)TK1151 95.573 / OH-1004 72.706
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G047320
LocationChr06:12802434-12806009 (+)
DescriptionSimilar to LRK10L-2.8: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g66930 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7. No verified direct reference in this release
At5g38260 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.1. No verified direct reference in this release
At1g67000 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.8. No verified direct reference in this release
At5g38250 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3. No verified direct reference in this release
At1g66910 LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020183 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030247 polysaccharide binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G66930
ath:AT1G67000
ath:AT5G38260
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868
Rank 1 · TkA06G047320 · TK1151
Cytoplasm0.086
Rank 2 · TkA06G047320 · TK1151
Endoplasmic reticulum0.076
Rank 3 · TkA06G047320 · TK1151
Nucleus0.056
Rank 4 · TkA06G047320 · TK1151
Lysosome / Vacuole0.024
Rank 5 · TkA06G047320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947GUB_WAK_bind30-95 aa
PF14380WAK_assoc175-249 aa
PF00008EGF229-250 aa
PF10140YukC264-297 aa
PF28398Epigen_C271-292 aa
PF03109ABC1337-369 aa
PF07714PK_Tyr_Ser-Thr340-613 aa
PF00069Pkinase342-611 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G047320PF13947GUB_WAK_bind30952e-1454.4
TkA06G047320PF14380WAK_assoc1752496.3e-1350.0
TkA06G047320PF00008EGF2292500.3511.9
TkA06G047320PF10140YukC2642970.08612.4
TkA06G047320PF28398Epigen_C2712920.5410.5
TkA06G047320PF03109ABC13373690.0008219.3
TkA06G047320PF07714PK_Tyr_Ser-Thr3406135e-45154.5
TkA06G047320PF00069Pkinase3426116.9e-47160.8
TkA06G047320PF06734UL974364750.2411.3
TkA06G047320PF03109ABC14524930.0008219.3
TkA06G047320PF17667Pkinase_fungal4585150.1311.7
TkA06G047320PF14531Kinase-like4595370.02414.6
TkA06G047320PF10140YukC4604870.08612.4
TkA06G047320PF13947GUB_WAK_bind5525632e-1454.4
TkA06G047320PF10140YukC5535810.08612.4
TkA06G047320PF04847Calcipressin6236441.49.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HQ23Arabidopsis thalianasp|F4HQ23|LRL27_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.740.100%Swiss-ProtMedium
Q9FF31Arabidopsis thalianasp|Q9FF31|LRL21_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.138.900%Swiss-ProtMedium
Q3ECH2Arabidopsis thalianasp|Q3ECH2|LRL28_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.840.400%Swiss-ProtMedium
F4KA51Arabidopsis thalianasp|F4KA51|LRL23_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.338.700%Swiss-ProtMedium
F4HQ20Arabidopsis thalianasp|F4HQ20|LRL25_ARATH LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.538.000%Swiss-ProtMedium

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