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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G041630
Reference: TK1151 Chr: Chr06 Coordinates: 11270427-11271856 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1203 bp · TkA06G041630|TK1151|cDNA

ATGCCAGCGTCCTCGAATTTAAACACACAGATCTTGGGAATACTCGATAAAATCAATCATCTTGTTCATCTTAAGCAGCTTCAAGCTTACCTCATCACCACCGGCTATTCGCAAGACCAGTTTTTCTCCTTCAAGCTCCTCCGGTGCTGTGTACTCTCTCTGTCCAACATCGATTACGCTCGCTCAATCTTCTCTTCTCTTGTTTCACCCAATGTCTATCTCTACACCGCCATGATCACAGCTTATTCTTCTCAACCAGA...

CDS

Download CDS FASTA

1203 bp · TkA06G041630|TK1151|CDS

ATGCCAGCGTCCTCGAATTTAAACACACAGATCTTGGGAATACTCGATAAAATCAATCATCTTGTTCATCTTAAGCAGCTTCAAGCTTACCTCATCACCACCGGCTATTCGCAAGACCAGTTTTTCTCCTTCAAGCTCCTCCGGTGCTGTGTACTCTCTCTGTCCAACATCGATTACGCTCGCTCAATCTTCTCTTCTCTTGTTTCACCCAATGTCTATCTCTACACCGCCATGATCACAGCTTATTCTTCTCAACCAGA...

Protein

Download Protein FASTA

400 aa · TkA06G041630|TK1151|PROTEIN

MPASSNLNTQILGILDKINHLVHLKQLQAYLITTGYSQDQFFSFKLLRCCVLSLSNIDYARSIFSSLVSPNVYLYTAMITAYSSQPDHDSSLLLYRDMVRKKRPKVSHFIYPHVLKSCPEVLGSNGTKMVHSQIVRTGYVEYPVVKTALLDAYSRFSSDIDAIHLLRRMIMNGKKPNHVTVLCSLSAFGHMGMLHLGKSTHSYILRNGLYPNSHIANGLVDMYGKCGSLKQARKVFDETPKRNLTSWNSMINSFALHGQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G041630
TK1151 IDTkA06G041630
OH-1004 IDLXL04_025777
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)84.900
Protein coverage (%)TK1151 95.500 / OH-1004 29.334
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G041630
LocationChr06:11270427-11271856 (+)
DescriptionSimilar to LHT1: Lysine histidine transporter 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g33350 Pentatricopeptide repeat-containing protein At1g33350. No verified direct reference in this release
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At5g08510 Pentatricopeptide repeat-containing protein At5g08510. No verified direct reference in this release
At5g59200 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025777 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003333 amino acid transmembrane transport Biological Process
GO:0006952 defense response Biological Process
GO:0016556 mRNA modification Biological Process
GO:0043090 amino acid import Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0016020 membrane Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0015171 amino acid transmembrane transporter activity Molecular Function
GO:0015172 acidic amino acid transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G24400
ath:AT1G33350
ath:AT1G48640
ath:AT1G67640
ath:AT5G40780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.697
Rank 1 · TkA06G041630 · TK1151
Plastid0.137
Rank 2 · TkA06G041630 · TK1151
Nucleus0.044
Rank 3 · TkA06G041630 · TK1151
Cytoplasm0.028
Rank 4 · TkA06G041630 · TK1151
Cell membrane0.005
Rank 5 · TkA06G041630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N64-84 aa
PF12921ATP1365-101 aa
PF12854PPR_168-82 aa
PF13812PPR_369-89 aa
PF13041PPR_270-102 aa
PF01535PPR74-101 aa
PF23276TPR_2474-96 aa
PF13428TPR_1475-101 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G041630PF29070MSC6_N64843.3e-0937.1
TkA06G041630PF12921ATP13651010.0001222.6
TkA06G041630PF12854PPR_168826.8e-2071.2
TkA06G041630PF13812PPR_369892.3e-1453.9
TkA06G041630PF13041PPR_2701021.2e-32112.4
TkA06G041630PF01535PPR741011.6e-31107.1
TkA06G041630PF23276TPR_2474961.6e-0732.0
TkA06G041630PF13428TPR_14751010.0004721.3
TkA06G041630PF17177PPR_long781202.4e-0524.6
TkA06G041630PF13041PPR_21471831.2e-32112.4
TkA06G041630PF01535PPR1471731.6e-31107.1
TkA06G041630PF13812PPR_31471812.3e-1453.9
TkA06G041630PF13428TPR_141471710.0004721.3
TkA06G041630PF29070MSC6_N1482373.3e-0937.1
TkA06G041630PF23276TPR_241481801.6e-0732.0
TkA06G041630PF12854PPR_11611696.8e-2071.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C501Arabidopsis thalianasp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g3335055.500%Swiss-ProtMedium
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054029.100%Swiss-ProtLow
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic32.600%Swiss-ProtMedium
Q9FNN7Arabidopsis thalianasp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g0851030.700%Swiss-ProtMedium
Q9FIF7Arabidopsis thalianasp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic28.700%Swiss-ProtLow

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