TkA06G039420 | RubberDandelionOmics

Gene overview

TkA06G039420

Reference: TK1151 Chr: Chr06 Coordinates: 10614737-10615879 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · TkA06G039420|TK1151|cDNA

ATGGAGAAAATACAACATAAAATGGTACCAGTGAACGACACAAACATGCACATAGCCGAGCTTGGCACAGGCCCAACCATCCTCTTCATCCATGGCTTCCCAGAGCTCTGGTACACCTGGCGCCACCAGATTCTCTACCTCGCCTCACATGGCTTCCATGCCGTGGCACCCGATCTCCGTGGCTACGGTGACACCACCGGCCCTCCTACCTCCGACCCCACCAAATTCACCACCCTTCATGTCGTTGGAGATCTGGTGGC...

CDS

Download CDS FASTA

993 bp · TkA06G039420|TK1151|CDS

ATGGAGAAAATACAACATAAAATGGTACCAGTGAACGACACAAACATGCACATAGCCGAGCTTGGCACAGGCCCAACCATCCTCTTCATCCATGGCTTCCCAGAGCTCTGGTACACCTGGCGCCACCAGATTCTCTACCTCGCCTCACATGGCTTCCATGCCGTGGCACCCGATCTCCGTGGCTACGGTGACACCACCGGCCCTCCTACCTCCGACCCCACCAAATTCACCACCCTTCATGTCGTTGGAGATCTGGTGGC...

Protein

Download Protein FASTA

330 aa · TkA06G039420|TK1151|PROTEIN

MEKIQHKMVPVNDTNMHIAELGTGPTILFIHGFPELWYTWRHQILYLASHGFHAVAPDLRGYGDTTGPPTSDPTKFTTLHVVGDLVALINTVAAAGEEKVFVVGHDWGAMIAWALCLYRPDKVKALVNMSVPFSPRNPKFKPIDTLRALYGNDYYIIRFQEDGEIEGEFAGIGFGSSLDDPITLPPWMSKEDLEFYTSKFEKTGFTGGLNYYRALNLNWELTGPWTGAQVKVPVKFIVGDLDLTYNSMGAKDYIEKGGFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G039420`
TK1151 ID	TkA06G039420
OH-1004 ID	LXL04_025993
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G039420`
Location	Chr06:10614737-10615879 (-)
Description	Similar to ephA: Epoxide hydrolase A (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_025993` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009636 response to toxic substance Biological Process GO:0004301 epoxide hydrolase activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference	mtu:Rv3617 mtv:RVBD_3617 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.736

Rank 1 · TkA06G039420 · TK1151

Nucleus0.294

Rank 2 · TkA06G039420 · TK1151

Peroxisome0.106

Rank 3 · TkA06G039420 · TK1151

Mitochondrion0.072

Rank 4 · TkA06G039420 · TK1151

Endoplasmic reticulum0.062

Rank 5 · TkA06G039420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07224Chlorophyllase20-120 aa

PF00756Esterase20-138 aa

PF07819PGAP123-32 aa

PF00561Abhydrolase_125-160 aa

PF12146Hydrolase_426-142 aa

PF12697Abhydrolase_627-288 aa

PF02129Peptidase_S1542-135 aa

PF01738DLH47-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G039420	`PF07224`	Chlorophyllase	20	120	1.1e-08	35.0
TkA06G039420	`PF00756`	Esterase	20	138	0.19	12.2
TkA06G039420	`PF07819`	PGAP1	23	32	0.11	13.0
TkA06G039420	`PF00561`	Abhydrolase_1	25	160	9.3e-27	95.0
TkA06G039420	`PF12146`	Hydrolase_4	26	142	2.7e-13	50.5
TkA06G039420	`PF12697`	Abhydrolase_6	27	288	7.1e-23	83.1
TkA06G039420	`PF02129`	Peptidase_S15	42	135	0.0083	16.6
TkA06G039420	`PF01738`	DLH	47	127	0.00034	21.0
TkA06G039420	`PF07819`	PGAP1	94	134	0.11	13.0
TkA06G039420	`PF07859`	Abhydrolase_3	94	137	0.28	11.6
TkA06G039420	`PF01738`	DLH	228	284	0.00034	21.0
TkA06G039420	`PF12146`	Hydrolase_4	229	257	2.7e-13	50.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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