RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G037540
Reference: TK1151 Chr: Chr06 Coordinates: 10061481-10062731 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1113 bp · TkA06G037540|TK1151|cDNA

ATGTCCACTTGTGCCTCCTTCTACGGTATCACTCTCAGTTCTTCATCTTCAACCTTCAATCGAAAAAAACACACTCTCGTAACCGCTTCAACTCCCACAGCTCTCGAATCACCTCCCAAATCTTCATTTCGCGACAAATCCCCCAAAGATATCAATGTTTTAGTCGTGGGTTCGACTGGTTACATCGGGAATTTTGTCGTGAAGGAATTGGTGAATAGAGGGTTCAATGTGATTGCGGTTTGTAGAGAAAAGAGTGGAAT...

CDS

Download CDS FASTA

1113 bp · TkA06G037540|TK1151|CDS

ATGTCCACTTGTGCCTCCTTCTACGGTATCACTCTCAGTTCTTCATCTTCAACCTTCAATCGAAAAAAACACACTCTCGTAACCGCTTCAACTCCCACAGCTCTCGAATCACCTCCCAAATCTTCATTTCGCGACAAATCCCCCAAAGATATCAATGTTTTAGTCGTGGGTTCGACTGGTTACATCGGGAATTTTGTCGTGAAGGAATTGGTGAATAGAGGGTTCAATGTGATTGCGGTTTGTAGAGAAAAGAGTGGAAT...

Protein

Download Protein FASTA

370 aa · TkA06G037540|TK1151|PROTEIN

MSTCASFYGITLSSSSSTFNRKKHTLVTASTPTALESPPKSSFRDKSPKDINVLVVGSTGYIGNFVVKELVNRGFNVIAVCREKSGIKANVCFSDVTELDILQQSLQKLGVSIDVVVSCLASRSGGVKDSWKIDYEATKNSLLAGRTFGAKHFVLLSAICVQKPLLEFQRAKLKFESELIKAAEDDDEFSYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGKLCACKPISESDLATFIADCVLKPDKINQILPIGGPGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G037540
TK1151 IDTkA06G037540
OH-1004 IDLXL04_033906
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)31.900
Protein coverage (%)TK1151 29.459 / OH-1004 39.394
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G037540
LocationChr06:10061481-10062731 (+)
DescriptionSimilar to At2g34460: Uncharacterized protein At2g34460, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18660 Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide.
Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species.2005 · DOI: 10.1105/tpc.104.027276
Characterization of the Arabidopsis thaliana mutant pcb2 which accumulates divinyl chlorophylls.2005 · DOI: 10.1093/pcp/pci053

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: D5L1S4 Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. No verified direct reference in this release
Os03g0351200 Catalyzes the conversion of divinyl chlorophyllide to monovinyl chlorophyllide. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033906 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0010287 plastoglobule Cellular Component
GO:0048046 apoplast Cellular Component
KEGG gene cross-reference
ath:AT2G34460
ath:AT2G37660
ath:AT3G18890
dosa:Os10g0100300
osa:4347935
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984
Rank 1 · TkA06G037540 · TK1151
Mitochondrion0.027
Rank 2 · TkA06G037540 · TK1151
Cytoplasm0.017
Rank 3 · TkA06G037540 · TK1151
Peroxisome0.013
Rank 4 · TkA06G037540 · TK1151
Nucleus0.012
Rank 5 · TkA06G037540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01488Shikimate_DH49-124 aa
PF05368NmrA52-328 aa
PF04321RmlD_sub_bind52-119 aa
PF01118Semialdhyde_dh52-122 aa
PF01370Epimerase53-161 aa
PF00106adh_short53-88 aa
PF08659KR53-116 aa
PF16363GDP_Man_Dehyd54-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G037540PF01488Shikimate_DH491240.07613.8
TkA06G037540PF05368NmrA523281.9e-1248.1
TkA06G037540PF04321RmlD_sub_bind521190.211.4
TkA06G037540PF01118Semialdhyde_dh521220.2212.7
TkA06G037540PF01370Epimerase531618.9e-1039.1
TkA06G037540PF00106adh_short53880.04613.9
TkA06G037540PF08659KR531160.06313.9
TkA06G037540PF16363GDP_Man_Dehyd54880.00616.8
TkA06G037540PF010733Beta_HSD541610.01814.8
TkA06G037540PF07993NAD_binding_4561040.008116.1
TkA06G037540PF13460NAD_binding_10572463.9e-1660.2
TkA06G037540PF07993NAD_binding_4981630.008116.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q1H537Arabidopsis thalianasp|Q1H537|DCVR_ARATH Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic77.700%Swiss-ProtHigh
D5L1S4Oryza sativa subsp. indicasp|D5L1S4|DCVR_ORYSI Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic64.200%Swiss-ProtHigh
Q10LH0Oryza sativa subsp. japonicasp|Q10LH0|DCVR_ORYSJ Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic64.200%Swiss-ProtHigh

JBrowse

View in Genome Browser