TkA05G473360 | RubberDandelionOmics

Gene overview

TkA05G473360

Reference: TK1151 Chr: Chr05 Coordinates: 118800187-118803130 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2161 bp · TkA05G473360|TK1151|cDNA

TGTAGCTCTACCGGTTTGCAAGCGTCTCTTTTTAAGTAGTGTAGGCCTGGGTTTAAAGGAGCCAGTTGTATTTGTGTTTTGCACGTTCATGTTAATGTTCATGTGAGTAAAATTTCATGCTTTTTGAGAGGGAAAACACGGTTAAAATAGTTGGAAAGAAAGCGTGTGTTTGGTTTTGATTTCGGTGTATAAGGCAAAGAATACCAACATAATTTCAGGAAAGAAAATTATTATATTTTCTGTGAGAGAGAATTTGGATC...

CDS

Download CDS FASTA

1311 bp · TkA05G473360|TK1151|CDS

ATGGAAGACGAATATCAAAAATTCGTTCGCAGAATGAACCCACCCCGAGTAGTAATCGACAACGAATCCTGTAAAAACGCTACCATCATCCAGGTGGATAGTGCTAACAAACATGGCATACTTCTGGAAGTCGTTCAAGTTCTCACTGATCTCAACTTCATCGTTACCAAAGCATACATCAGTTCCGACGGCGGCTGGTTCATGGACGTCTTCAATGTCACTGATCAAGAAGGGAATAAAATCAGAGACCAAGGAATCTT...

Protein

Download Protein FASTA

436 aa · TkA05G473360|TK1151|PROTEIN

MEDEYQKFVRRMNPPRVVIDNESCKNATIIQVDSANKHGILLEVVQVLTDLNFIVTKAYISSDGGWFMDVFNVTDQEGNKIRDQGILDYIQKVLGSDTNSIKSIAVTSSTDRTVIELTGSDRPGLLSEVCAVLTHFKCNVLNAEVWTHNTRAAFIVQVSDHDSELAVTDPQRLTAIKQMLSHILEGSNTSREANTVVSHGVVHTERRLHQMMLADRDYERGTTTGAGGGEDEARRPDVNVVNWYDKDCSVVTIRCKDRPK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G473360`
TK1151 ID	TkA05G473360
OH-1004 ID	LXL04_022512
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 96.889 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G473360

Location Chr05:118800187-118803130 (-)

Description Similar to ACR4: ACT domain-containing protein ACR4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69040`	May bind amino acids.	No verified direct reference in this release
`At2g03730`	May bind amino acids.	No verified direct reference in this release
`At3g01990`	May bind amino acids.	No verified direct reference in this release
`At1g76990`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484
`At1g12420`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022512 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006521 regulation of amino acid metabolic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016597 amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G12420

ath:AT1G69040

ath:AT1G76990

ath:AT2G03730

ath:AT3G01990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · TkA05G473360 · TK1151

Nucleus0.405

Rank 2 · TkA05G473360 · TK1151

Cell membrane0.168

Rank 3 · TkA05G473360 · TK1151

Lysosome / Vacuole0.062

Rank 4 · TkA05G473360 · TK1151

Endoplasmic reticulum0.046

Rank 5 · TkA05G473360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24931ACT_ACR9_3rd17-95 aa

PF24914ACR10_N22-81 aa

PF26956ACT_ACR_D123-97 aa

PF22754bHLH-TF_ACT-like_plant26-90 aa

PF01842ACT28-78 aa

PF13291ACT_430-62 aa

PF22629ACT_AHAS_ss30-60 aa

PF13291ACT_484-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G473360	`PF24931`	ACT_ACR9_3rd	17	95	1.8e-17	63.9
TkA05G473360	`PF24914`	ACR10_N	22	81	3.1e-17	62.5
TkA05G473360	`PF26956`	ACT_ACR_D1	23	97	1.6e-51	172.8
TkA05G473360	`PF22754`	bHLH-TF_ACT-like_plant	26	90	1.6e-12	48.1
TkA05G473360	`PF01842`	ACT	28	78	5.8e-34	116.2
TkA05G473360	`PF13291`	ACT_4	30	62	9.8e-15	55.7
TkA05G473360	`PF22629`	ACT_AHAS_ss	30	60	2.6e-07	31.4
TkA05G473360	`PF13291`	ACT_4	84	116	9.8e-15	55.7
TkA05G473360	`PF22629`	ACT_AHAS_ss	85	111	2.6e-07	31.4
TkA05G473360	`PF22754`	bHLH-TF_ACT-like_plant	104	156	1.6e-12	48.1
TkA05G473360	`PF24931`	ACT_ACR9_3rd	108	181	1.8e-17	63.9
TkA05G473360	`PF24914`	ACR10_N	108	168	3.1e-17	62.5
TkA05G473360	`PF26956`	ACT_ACR_D1	110	180	1.6e-51	172.8
TkA05G473360	`PF01842`	ACT	113	166	5.8e-34	116.2
TkA05G473360	`PF13291`	ACT_4	114	162	9.8e-15	55.7
TkA05G473360	`PF13740`	ACT_6	114	163	5.2e-11	42.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LJW3`	Arabidopsis thaliana	sp\|Q8LJW3\|ACR4_ARATH ACT domain-containing protein ACR4	71.700%	Swiss-Prot	High
`Q9ZPQ8`	Arabidopsis thaliana	sp\|Q9ZPQ8\|ACR5_ARATH ACT domain-containing protein ACR5	64.100%	Swiss-Prot	High
`Q9SGA0`	Arabidopsis thaliana	sp\|Q9SGA0\|ACR6_ARATH ACT domain-containing protein ACR6	57.400%	Swiss-Prot	High
`O49285`	Arabidopsis thaliana	sp\|O49285\|ACR3_ARATH ACT domain-containing protein ACR3	51.100%	Swiss-Prot	High
`Q9LNA5`	Arabidopsis thaliana	sp\|Q9LNA5\|ACR8_ARATH ACT domain-containing protein ACR8	47.100%	Swiss-Prot	Medium

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