LXL04_022512 | RubberDandelionOmics

Gene overview

LXL04_022512

Reference: OH-1004 Chr: Chr04 Coordinates: 151916528-151918420 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1353 bp · LXL04_022512|LXL04_022512|OH1004|cDNA

ATGTATTTCTCAGAGACCACAAGTAGGACCTACTCTCGAAACATGGAAGACGAATATCAAAAATTCGTTCGCAGAATGAACCCACCCCGAGTAGTAATCGACAACGAATCCTGTAAAAACGCTACCATCATCCAGGTGGATAGTGCTAACAAACATGGCATACTTCTGGAAGTCGTTCAAGTTCTCACTGATCTCAACTTCATCGTTACCAAAGCATACATCAGTTCCGACGGCGGCTGGTTCATGGACGTCTTCAATGT...

CDS

Download CDS FASTA

1353 bp · LXL04_022512|LXL04_022512|OH1004|CDS

ATGTATTTCTCAGAGACCACAAGTAGGACCTACTCTCGAAACATGGAAGACGAATATCAAAAATTCGTTCGCAGAATGAACCCACCCCGAGTAGTAATCGACAACGAATCCTGTAAAAACGCTACCATCATCCAGGTGGATAGTGCTAACAAACATGGCATACTTCTGGAAGTCGTTCAAGTTCTCACTGATCTCAACTTCATCGTTACCAAAGCATACATCAGTTCCGACGGCGGCTGGTTCATGGACGTCTTCAATGT...

Protein

Download Protein FASTA

450 aa · LXL04_022512|LXL04_022512|OH1004|PROTEIN

MYFSETTSRTYSRNMEDEYQKFVRRMNPPRVVIDNESCKNATIIQVDSANKHGILLEVVQVLTDLNFIVTKAYISSDGGWFMDVFNVTDQEGNKIRDQGILDYIQKVLGSDTNSIKSIAVTSSTDRTVIELTGSDRPGLLSEVCAVLTHFKCNVLNAEVWTHNTRAAFIVQVSDHDSELAVTDPQRLTAIKQMLSHILEGSNTSREANTVVSHGVVHTERRLHQMMLADRDYERGTTTGAGGGEDEARRPDVNVVNWYDK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022512`
TK1151 ID	TkA05G473360
OH-1004 ID	LXL04_022512
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 96.889 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_022512

Location Chr04:151916528-151918420 (-)

Description Similar to ACR4: ACT domain-containing protein ACR4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69040`	May bind amino acids.	No verified direct reference in this release
`At2g03730`	May bind amino acids.	No verified direct reference in this release
`At3g01990`	May bind amino acids.	No verified direct reference in this release
`At1g76990`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484
`At1g12420`	May bind amino acids.	Molecular characterization of a novel gene family encoding ACT domain repeat proteins in Arabidopsis.2002 · DOI: 10.1104/pp.007484

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022512 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006521 regulation of amino acid metabolic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016597 amino acid binding Molecular Function

KEGG gene cross-reference

ath:AT1G12420

ath:AT1G69040

ath:AT1G76990

ath:AT2G03730

ath:AT3G01990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.491

Rank 1 · LXL04_022512 · OH-1004

Nucleus0.408

Rank 2 · LXL04_022512 · OH-1004

Cell membrane0.165

Rank 3 · LXL04_022512 · OH-1004

Lysosome / Vacuole0.063

Rank 4 · LXL04_022512 · OH-1004

Endoplasmic reticulum0.046

Rank 5 · LXL04_022512 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24931.2ACT_ACR9_3rd31-108 aa

PF24914.2ACR10_N36-95 aa

PF26956.1ACT_ACR_D137-111 aa

PF01842.32ACT42-92 aa

PF01842.32ACT127-180 aa

PF13291.13ACT_4127-176 aa

PF13740.13ACT_6128-177 aa

PF24931.2ACT_ACR9_3rd252-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022512	`PF24931.2`	ACT_ACR9_3rd	31	108	2.1e-17	63.7
LXL04_022512	`PF24914.2`	ACR10_N	36	95	3.6e-17	62.3
LXL04_022512	`PF26956.1`	ACT_ACR_D1	37	111	1.9e-51	172.5
LXL04_022512	`PF01842.32`	ACT	42	92	6.9e-34	115.9
LXL04_022512	`PF01842.32`	ACT	127	180	6.9e-34	115.9
LXL04_022512	`PF13291.13`	ACT_4	127	176	1.1e-14	55.6
LXL04_022512	`PF13740.13`	ACT_6	128	177	5.9e-11	42.8
LXL04_022512	`PF24931.2`	ACT_ACR9_3rd	252	335	2.1e-17	63.7
LXL04_022512	`PF01842.32`	ACT	347	404	6.9e-34	115.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LJW3`	Arabidopsis thaliana	ACT domain-containing protein ACR4	71.111%	Swiss-Prot	strong database homology
`Q9ZPQ8`	Arabidopsis thaliana	ACT domain-containing protein ACR5	64.097%	Swiss-Prot	strong database homology
`Q9SGA0`	Arabidopsis thaliana	ACT domain-containing protein ACR6	60.453%	Swiss-Prot	strong database homology
`O49285`	Arabidopsis thaliana	ACT domain-containing protein ACR3	49.890%	Swiss-Prot	moderate database homology
`Q9LNA5`	Arabidopsis thaliana	ACT domain-containing protein ACR8	47.321%	Swiss-Prot	moderate database homology

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