TkA05G468770 | RubberDandelionOmics

Gene overview

TkA05G468770

Reference: TK1151 Chr: Chr05 Coordinates: 117427922-117430318 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1259 bp · TkA05G468770|TK1151|cDNA

CAGACGTTCTGTTCTTCATTTATCTTACTCCCCAAGAGTTCTTCCGAATTTTCCATCTCCTCAAGTTTCTTCTTGATCTTCCTCAAATCAGCCGCTCGATCCATAAGTCCTGAGCTTTGTAACTTCATTACATTTAGGTACGAGAAGATGCCAAGAGAAACAATGGACGTTCCAAAAGTCGGATTCAGTTTCGAGCTGTGTGTGAGAAACTATATGGTGGAGAAAAATGGATTAAAATCCCCACCGTGTTTGAAAACGGG...

CDS

Download CDS FASTA

975 bp · TkA05G468770|TK1151|CDS

CAGACGTTCTGTTCTTCATTTATCTTACTCCCCAAGAGTTCTTCCGAATTTTCCATCTCCTCAAGTTTCTTCTTGATCTTCCTCAAATCAGCCGCTCGATCCATAAGTCCTGAGCTTTGTAACTTCATTACATTTAGGTACGAGAAGATGCCAAGAGAAACAATGGACGTTCCAAAAGTCGGATTCAGTTTCGAGCTGTGTGTGAGAAACTATATGGTGGAGAAAAATGGATTAAAATCCCCACCGTGTTTGAAAACGGG...

Protein

Download Protein FASTA

324 aa · TkA05G468770|TK1151|PROTEIN

QTFCSSFILLPKSSSEFSISSSFFLIFLKSAARSISPELCNFITFRYEKMPRETMDVPKVGFSFELCVRNYMVEKNGLKSPPCLKTGTTIVGLVYETGVVLGADTRATERPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDNISSQLKLHRYHTGRESRVVTALTLSKSHLFGYQGHVSAAFVVAWCVVDATGPHLHTIYPHGSTDTLPFATMGSGSLAAMAIFESEYREGLTRDEGVNLVTKAICSGIFNDLGSGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G468770`
TK1151 ID	TkA05G468770
OH-1004 ID	LXL04_025798
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.800
Protein coverage (%)	TK1151 85.802 / OH-1004 32.019 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G468770

Location Chr05:117427922-117430318 (-)

Description Similar to PBB2: Proteasome subunit beta type-7-B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40580`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At3g27430`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025798 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0042761 very long-chain fatty acid biosynthetic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

KEGG gene cross-reference

ath:AT1G01600

ath:AT1G63710

ath:AT3G27430

ath:AT5G23190

ath:AT5G40580

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.666

Rank 1 · TkA05G468770 · TK1151

Nucleus0.483

Rank 2 · TkA05G468770 · TK1151

Mitochondrion0.084

Rank 3 · TkA05G468770 · TK1151

Cell membrane0.055

Rank 4 · TkA05G468770 · TK1151

Endoplasmic reticulum0.047

Rank 5 · TkA05G468770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19983DUF641921-38 aa

PF00227Proteasome85-267 aa

PF19983DUF6419173-194 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G468770	`PF19983`	DUF6419	21	38	0.12	13.4
TkA05G468770	`PF00227`	Proteasome	85	267	7.5e-46	156.9
TkA05G468770	`PF19983`	DUF6419	173	194	0.12	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q7DLS1`	Arabidopsis thaliana	sp\|Q7DLS1\|PSB7B_ARATH Proteasome subunit beta type-7-B	76.100%	Swiss-Prot	High
`O23710`	Arabidopsis thaliana	sp\|O23710\|PSB7A_ARATH Proteasome subunit beta type-7-A	75.700%	Swiss-Prot	High

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