TkA05G465760 | RubberDandelionOmics

Gene overview

TkA05G465760

Reference: TK1151 Chr: Chr05 Coordinates: 116751770-116754460 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2541 bp · TkA05G465760|TK1151|cDNA

ATTTTCAAAAGTCAGCTAGCGGTGAACCTACAGGTTTAGGACGAATGGGTCTTGATGGAAATCTTTATATAAGAAGTATGATCATCTTCCCCAATCACCACACAAAATCACAAACACACAAAAAGCAACCATGCGTTTACAGATACTTGTAGTAGCTGTAGCAATGGCAGCTTTGGGGGCAGCAAGTGCTCAAGACGAGTCATATTGTAGCAAACCATGTGGCAATGTGACTGTTGAGTACCCTTTTGGTTACATGGGAT...

CDS

Download CDS FASTA

1131 bp · TkA05G465760|TK1151|CDS

ATGATGCTTAGAGAAAAATTCTTTCAGCAAAATGGTGGAATAATGTTGCAGCAACGAATGTCTAGAGATAAAGGTTCTCAAGATCAGGCGAAGGTGTTCACCATAGAGGAGCTTAAGAAAGCAACCAATAACTATGATGAGAGCAGGATTATCGGCAAGGGTAGCTATGGCACAGTTTATAAAGGAGTACTATCTGATAACAGAGTAGTTGCCATAAAGAAGTCCAAAATAGCAGATCAAAATGAAACCCAGATAGAGCA...

Protein

Download Protein FASTA

376 aa · TkA05G465760|TK1151|PROTEIN

MMLREKFFQQNGGIMLQQRMSRDKGSQDQAKVFTIEELKKATNNYDESRIIGKGSYGTVYKGVLSDNRVVAIKKSKIADQNETQIEQFINEVIILSQINHRNVLKLIGCCLESEVPSLVYEFIQNGTVSDHLHNKSKSSAITWDIRLRIAHGTAEALSYLHSASSIPIINRDVKPTNILLDESYVAKVADFGASRLIPTDQIEVATMVQGTLGYLDPEYLQTQQLTDKSDVYSFGAVLVELLTGKNVLNFDRPEGERNQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G465760`
TK1151 ID	TkA05G465760
OH-1004 ID	LXL04_022421
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	92.400
Protein coverage (%)	TK1151 99.468 / OH-1004 20.458 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G465760

Location Chr05:116751770-116754460 (-)

Description Similar to WAK2: Wall-associated receptor kinase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21230`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g21210`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology.2001 · DOI: 10.1105/tpc.13.6.1317
`At1g21240`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g21250`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	Oxygen-evolving enhancer protein 2 is phosphorylated by glycine-rich protein 3/wall-associated kinase 1 in Arabidopsis.2003 · DOI: 10.1016/s0006-291x(03)00851-9 Aluminum-induced gene expression and protein localization of a cell wall-associated receptor kinase in Arabidopsis.2003 · DOI: 10.1104/pp.103.022129
`At3g25490`	Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022421 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009311 oligosaccharide metabolic process Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009992 intracellular water homeostasis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030247 polysaccharide binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G21240

ath:AT1G21270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.612

Rank 1 · TkA05G465760 · TK1151

Cytoplasm0.310

Rank 2 · TkA05G465760 · TK1151

Nucleus0.203

Rank 3 · TkA05G465760 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA05G465760 · TK1151

Golgi apparatus0.036

Rank 5 · TkA05G465760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03109ABC144-76 aa

PF00069Pkinase45-314 aa

PF07714PK_Tyr_Ser-Thr49-317 aa

PF03109ABC1159-202 aa

PF21494PKC_C2262-304 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G465760	`PF03109`	ABC1	44	76	0.00079	19.4
TkA05G465760	`PF00069`	Pkinase	45	314	2.6e-50	172.0
TkA05G465760	`PF07714`	PK_Tyr_Ser-Thr	49	317	1.3e-46	159.8
TkA05G465760	`PF03109`	ABC1	159	202	0.00079	19.4
TkA05G465760	`PF21494`	PKC_C2	262	304	0.18	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMN7`	Arabidopsis thaliana	sp\|Q9LMN7\|WAK5_ARATH Wall-associated receptor kinase 5	57.900%	Swiss-Prot	High
`Q9LMN6`	Arabidopsis thaliana	sp\|Q9LMN6\|WAK4_ARATH Wall-associated receptor kinase 4	52.300%	Swiss-Prot	High
`Q9LMN8`	Arabidopsis thaliana	sp\|Q9LMN8\|WAK3_ARATH Wall-associated receptor kinase 3	55.800%	Swiss-Prot	High
`Q39191`	Arabidopsis thaliana	sp\|Q39191\|WAK1_ARATH Wall-associated receptor kinase 1	55.800%	Swiss-Prot	High
`Q9LSV3`	Arabidopsis thaliana	sp\|Q9LSV3\|WAKLS_ARATH Putative wall-associated receptor kinase-like 16	54.900%	Swiss-Prot	High

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