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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022421
Reference: OH-1004 Chr: Chr04 Coordinates: 150083260-150096970 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5766 bp · LXL04_022421|LXL04_022421|OH1004|cDNA

ATGCTTTTACAGATACTTGTAGCCATGGCAGCTTTGGGGGCAGCAAGTGCTCAACAGGAGCCAAAATGTAAAAAACCATGTGGCAATTTGACTATCGAGTACCCTTTTGGTTATGAGGGATGCAACTACAATTCTGCTTTCCTTGTCACCTGTAACGAAACATCCGGTGAGCCAATACCTATCCTTGGAGATGGCACAACCGACATTATTGTTAAAAATATGTCGATTGACAGAGGTGAGTTGGAGATTATGATGTTTGT...

CDS

Download CDS FASTA

5766 bp · LXL04_022421|LXL04_022421|OH1004|CDS

ATGCTTTTACAGATACTTGTAGCCATGGCAGCTTTGGGGGCAGCAAGTGCTCAACAGGAGCCAAAATGTAAAAAACCATGTGGCAATTTGACTATCGAGTACCCTTTTGGTTATGAGGGATGCAACTACAATTCTGCTTTCCTTGTCACCTGTAACGAAACATCCGGTGAGCCAATACCTATCCTTGGAGATGGCACAACCGACATTATTGTTAAAAATATGTCGATTGACAGAGGTGAGTTGGAGATTATGATGTTTGT...

Protein

Download Protein FASTA

1921 aa · LXL04_022421|LXL04_022421|OH1004|PROTEIN

MLLQILVAMAALGAASAQQEPKCKKPCGNLTIEYPFGYEGCNYNSAFLVTCNETSGEPIPILGDGTTDIIVKNMSIDRGELEIMMFVGRSCYNSSGYTGGIDASLTLGSLEEIRVSAKNRFVAIGCDTLGAFRGTRGKMIDVTGCYSACSRNSLFINGSCSGVGCCEAAVPEGISSFNITLISINDHKNITDFNPCSYGFFLKDGGFNFSTNDLRDLQSSRMPMLLDWAIGNLTWETASGDANSFLCKGNSVYNQDYTGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022421
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022421
LocationChr04:150083260-150096970 (-)
DescriptionSimilar to WAK2: Wall-associated receptor kinase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21270 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. No verified direct reference in this release
At1g21240 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. No verified direct reference in this release
At1g21230 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. No verified direct reference in this release
At1g21250 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Oxygen-evolving enhancer protein 2 is phosphorylated by glycine-rich protein 3/wall-associated kinase 1 in Arabidopsis.2003 · DOI: 10.1016/s0006-291x(03)00851-9
Aluminum-induced gene expression and protein localization of a cell wall-associated receptor kinase in Arabidopsis.2003 · DOI: 10.1104/pp.103.022129
At1g21210 Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology.2001 · DOI: 10.1105/tpc.13.6.1317

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022421 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009311 oligosaccharide metabolic process Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0009992 intracellular water homeostasis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005509 calcium ion binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030247 polysaccharide binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G21240
ath:AT1G21270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.747
Rank 1 · LXL04_022421 · OH-1004
Cytoplasm0.133
Rank 2 · LXL04_022421 · OH-1004
Endoplasmic reticulum0.073
Rank 3 · LXL04_022421 · OH-1004
Nucleus0.060
Rank 4 · LXL04_022421 · OH-1004
Lysosome / Vacuole0.048
Rank 5 · LXL04_022421 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947.12GUB_WAK_bind23-83 aa
PF07645.22EGF_CA296-329 aa
PF00069.32Pkinase419-687 aa
PF07714.24PK_Tyr_Ser-Thr423-691 aa
PF13947.12GUB_WAK_bind831-892 aa
PF00008.34EGF1099-1126 aa
PF00069.32Pkinase1216-1503 aa
PF07714.24PK_Tyr_Ser-Thr1220-1507 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022421PF13947.12GUB_WAK_bind23832.6e-1557.3
LXL04_022421PF07645.22EGF_CA2963297.7e-0833.2
LXL04_022421PF00069.32Pkinase4196872.2e-126421.4
LXL04_022421PF07714.24PK_Tyr_Ser-Thr4236915e-121403.6
LXL04_022421PF13947.12GUB_WAK_bind8318922.6e-1557.3
LXL04_022421PF00008.34EGF109911263.7e-0937.4
LXL04_022421PF00069.32Pkinase121615032.2e-126421.4
LXL04_022421PF07714.24PK_Tyr_Ser-Thr122015075e-121403.6
LXL04_022421PF07714.24PK_Tyr_Ser-Thr163117545e-121403.6
LXL04_022421PF00069.32Pkinase163217542.2e-126421.4
LXL04_022421PF00069.32Pkinase175018402.2e-126421.4
LXL04_022421PF07714.24PK_Tyr_Ser-Thr175018445e-121403.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMP1Arabidopsis thalianaWall-associated receptor kinase 243.660%Swiss-Protweak database homology
Q9LMN8Arabidopsis thalianaWall-associated receptor kinase 343.324%Swiss-Protweak database homology
Q9LMN7Arabidopsis thalianaWall-associated receptor kinase 542.913%Swiss-Protweak database homology
Q39191Arabidopsis thalianaWall-associated receptor kinase 143.579%Swiss-Protweak database homology
Q9LMN6Arabidopsis thalianaWall-associated receptor kinase 441.260%Swiss-Protweak database homology

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