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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G463790
Reference: TK1151 Chr: Chr05 Coordinates: 116164820-116167885 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1420 bp · TkA05G463790|TK1151|cDNA

CTTAAGCCGTTAACTGCATCAACATAAACACAACGTCCACCGCTGGAAAGTGGAAACCACCCAAACTTGCTTTGTTGGATCTTCTAGTTCAAAATTGCCATTTCGTGAAATATCAGTGCAGAGAAAATGATTCTGGCGTAAAACCAGCTTGTAAACAATCTACTCAAAGAACACATTGAAAGGAGTATCAGCAGTTGATTCATCCGTAGATCTCAAACGACCTCCAGTATGCAACTATTAGAGGATCCAGTTCAGAGATA...

CDS

Download CDS FASTA

912 bp · TkA05G463790|TK1151|CDS

ATGTCTCGCACAATGTTTTCAAGGAGTCTATCCCGACTACAACACTTATCCAGACACGGTGGTCTTTCCGGCCATAGTTCAAGCCCTAATTTCAAACGTGCAGTTCTCACAGCTTTCCAGCCCCTTCTTCACAATAGGCCTTATGCCAACACTCCTCAACATGCGGCTTCTACTTCTTCTTTGAACCAAACTGAACTAGCTAAATTTGCAGCCATAGCTGACAGTTGGTGGGATGCTGAAGGGCCTTTTAAGCCATTGCA...

Protein

Download Protein FASTA

303 aa · TkA05G463790|TK1151|PROTEIN

MSRTMFSRSLSRLQHLSRHGGLSGHSSSPNFKRAVLTAFQPLLHNRPYANTPQHAASTSSLNQTELAKFAAIADSWWDAEGPFKPLHVMNPTRLAFIRSTLCRHFGKDPFSARPFEGLKFIDVGCGGGILSEPLARMGASVTGIDAVDKNIKIARLHADLDPIASSIEYRCTTAENLVEEQKKFDAVIALEVIEHVADPAEFCKSLSALTVSNGATVISTINRSMRAYATAIVAAEYILHWLPKGTHQWSSFLTPEELVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G463790
TK1151 IDTkA05G463790
OH-1004 IDLXL04_022374
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)91.000
Protein coverage (%)TK1151 22.112 / OH-1004 26.172
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G463790
LocationChr05:116164820-116167885 (-)
DescriptionSimilar to COQ3: Ubiquinone biosynthesis O-methyltransferase, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30920 O-methyltransferase required for two non-consecutive steps during ubiquinone biosynthesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022374 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006744 ubiquinone biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005740 mitochondrial envelope Cellular Component
GO:0031314 extrinsic component of mitochondrial inner membrane Cellular Component
GO:0010420 polyprenyldihydroxybenzoate methyltransferase activity Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0061542 3-demethylubiquinol 3-O-methyltransferase activity Molecular Function
GO:0102208 2-polyprenyl-6-hydroxyphenol methylase activity Molecular Function
GO:0120537 3-demethylubiquinone 3-O-methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT2G30920
mag:amb1611
rpc:RPC_0515
rpe:RPE_0157
rru:Rru_A0742
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.946
Rank 1 · TkA05G463790 · TK1151
Cytoplasm0.059
Rank 2 · TkA05G463790 · TK1151
Nucleus0.049
Rank 3 · TkA05G463790 · TK1151
Cell membrane0.015
Rank 4 · TkA05G463790 · TK1151
Plastid0.011
Rank 5 · TkA05G463790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13489Methyltransf_23109-265 aa
PF08003Methyltransf_9114-221 aa
PF01209Ubie_methyltran115-201 aa
PF13847Methyltransf_31116-248 aa
PF02353CMAS116-230 aa
PF05219DREV116-221 aa
PF13679Methyltransf_32117-190 aa
PF06325PrmA119-221 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G463790PF13489Methyltransf_231092651.7e-1970.9
TkA05G463790PF08003Methyltransf_91142210.03713.7
TkA05G463790PF01209Ubie_methyltran1152010.004317.2
TkA05G463790PF13847Methyltransf_311162484.6e-1453.2
TkA05G463790PF02353CMAS1162303.7e-0730.5
TkA05G463790PF05219DREV1162210.03813.8
TkA05G463790PF13679Methyltransf_321171900.01416.0
TkA05G463790PF06325PrmA1192212.6e-0731.2
TkA05G463790PF05175MTS1191880.00218.5
TkA05G463790PF05401NodS1202070.001619.1
TkA05G463790PF09445Methyltransf_151201830.2211.8
TkA05G463790PF08241Methyltransf_111212174.5e-1866.4
TkA05G463790PF13649Methyltransf_251212113.7e-1453.9
TkA05G463790PF08242Methyltransf_121212141.4e-1145.6
TkA05G463790PF29244Methyltransf_ANTKMT1221710.2912.4
TkA05G463790PF25779Tubulin-bind_CPAP1621850.3212.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O49354Arabidopsis thalianasp|O49354|COQ3_ARATH Ubiquinone biosynthesis O-methyltransferase, mitochondrial74.100%Swiss-ProtHigh

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