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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G463680
Reference: TK1151 Chr: Chr05 Coordinates: 116134960-116136872 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1828 bp · TkA05G463680|TK1151|cDNA

CAAAGGTGTTTTAGAACAAAAGTTTGAATCTAAGCTTTTAGGAAGGAAAAAAGCCACCACCAAGAATCGAATTCATGAGCTCCCACATTTATGTGGACACAAGCTCAAGCGAAGTCTTCAAATATCTCTCTATGGAGTGAGAAGATTAGTTTCAGGAGATGGCAATCAGATCACTCTCCCGGCGAACCAACACCATATACCGTCTTTTCACCGGAACTACTGCTTCTCCGACGCCCAATCTCCGATTCGTCTCACCTCCT...

CDS

Download CDS FASTA

1632 bp · TkA05G463680|TK1151|CDS

ATGGCAATCAGATCACTCTCCCGGCGAACCAACACCATATACCGTCTTTTCACCGGAACTACTGCTTCTCCGACGCCCAATCTCCGATTCGTCTCACCTCCTCCCTCCTCACTTCACCTCCTCTTCCCACCCTACTCCTCTCAATCTCTCCCCTCTTCCGCCCCACCTACCCATTCCTCTTCTTCAACAGAACTCGTCAACGACATCTCTCGAATCCTCAGTGACTACCGGAGCCCCCGTCACGACATCGTTTCAGCTCT...

Protein

Download Protein FASTA

543 aa · TkA05G463680|TK1151|PROTEIN

MAIRSLSRRTNTIYRLFTGTTASPTPNLRFVSPPPSSLHLLFPPYSSQSLPSSAPPTHSSSSTELVNDISRILSDYRSPRHDIVSALTPFSDTVTTDLVEQVLKRCNNLGVSAHRFFLWAKNLPGFVHSKDSYHILIDILGRSKQFPLVWDFLGEMKESQSCEITSVIFWGIFSAYSRANLPSDAIRAFNNMVDYGIQPSINDLDQLLYVLCKRKHVREAQTFFDKIKHELSPTVKTYSILVRGWGFIGESSEAQKVFDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G463680
TK1151 IDTkA05G463680
OH-1004 IDLXL04_022372
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G463680
LocationChr05:116134960-116136872 (-)
DescriptionSimilar to At1g52640: Pentatricopeptide repeat-containing protein At1g52640, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g52640 Pentatricopeptide repeat-containing protein At1g52640, mitochondrial. No verified direct reference in this release
At3g22670 Pentatricopeptide repeat-containing protein At3g22670, mitochondrial. No verified direct reference in this release
At2g13420 Pentatricopeptide repeat-containing protein At2g13420, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022372 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G20300
ath:AT1G52640
ath:AT1G77360
ath:AT3G49730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.718
Rank 1 · TkA05G463680 · TK1151
Plastid0.150
Rank 2 · TkA05G463680 · TK1151
Nucleus0.077
Rank 3 · TkA05G463680 · TK1151
Cytoplasm0.029
Rank 4 · TkA05G463680 · TK1151
Cell membrane0.010
Rank 5 · TkA05G463680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24760TPR_IF140_C111-157 aa
PF29070MSC6_N131-249 aa
PF13041PPR_2132-159 aa
PF01535PPR132-159 aa
PF25064ARM_TT21_5th136-191 aa
PF23276TPR_24159-260 aa
PF29978ATP18_TPR171-194 aa
PF13041PPR_2172-200 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G463680PF24760TPR_IF140_C1111570.0002322.3
TkA05G463680PF29070MSC6_N1312492.2e-2590.3
TkA05G463680PF13041PPR_21321599.1e-82269.7
TkA05G463680PF01535PPR1321591.6e-51169.7
TkA05G463680PF25064ARM_TT21_5th1361910.0215.9
TkA05G463680PF23276TPR_241592603.2e-2279.6
TkA05G463680PF29978ATP18_TPR1711941.8e-0525.4
TkA05G463680PF13041PPR_21722009.1e-82269.7
TkA05G463680PF01535PPR1731971.6e-51169.7
TkA05G463680PF12854PPR_11741932.2e-67223.1
TkA05G463680PF07719TPR_21761900.5711.2
TkA05G463680PF11663Toxin_YhaV1822080.008416.9
TkA05G463680PF25064ARM_TT21_5th1852330.0215.9
TkA05G463680PF17177PPR_long1862412.8e-2383.1
TkA05G463680PF13812PPR_31892422.7e-39133.8
TkA05G463680PF13041PPR_22072449.1e-82269.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSR6Arabidopsis thalianasp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial65.900%Swiss-ProtHigh
Q9LUJ4Arabidopsis thalianasp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial27.100%Swiss-ProtLow
Q0WP85Arabidopsis thalianasp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial28.500%Swiss-ProtLow

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