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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_022372
Reference: OH-1004 Chr: Chr04 Coordinates: 149296563-149298194 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1632 bp · LXL04_022372|LXL04_022372|OH1004|cDNA

ATGGCAATCAGATCACTCTCCCGGCGAACCAAAACCATATACCGTCTATTCACCGGAACTACTGCTTCTCCGACACCCAATCTCCGACTCGTCTCACCTCCTCCCTCCTTGCTTCACCTCCTCTTTCTACCCTACTCCTCTCTAACTCTCCCTTCTTCCGCCCCACCTACCCATTCCTCTTCTTCAACAGAACTCGTCAACGACATCTCTCGAATCCTCAGTGACTACCGGAGCCCCCGTCACGACATCGTTTCAGCTCT...

CDS

Download CDS FASTA

1632 bp · LXL04_022372|LXL04_022372|OH1004|CDS

ATGGCAATCAGATCACTCTCCCGGCGAACCAAAACCATATACCGTCTATTCACCGGAACTACTGCTTCTCCGACACCCAATCTCCGACTCGTCTCACCTCCTCCCTCCTTGCTTCACCTCCTCTTTCTACCCTACTCCTCTCTAACTCTCCCTTCTTCCGCCCCACCTACCCATTCCTCTTCTTCAACAGAACTCGTCAACGACATCTCTCGAATCCTCAGTGACTACCGGAGCCCCCGTCACGACATCGTTTCAGCTCT...

Protein

Download Protein FASTA

543 aa · LXL04_022372|LXL04_022372|OH1004|PROTEIN

MAIRSLSRRTKTIYRLFTGTTASPTPNLRLVSPPPSLLHLLFLPYSSLTLPSSAPPTHSSSSTELVNDISRILSDYRSPRHDIVSALTPFSDTVTTDLVEQVLKRCNNLGVSAHRFFLWAKNLPGFVHSKYSYHILIDILGRSKQFPLVWDFLGEMKESQSCEITSVIFWGIFSAYSRANLPSDAIRAFNNMVDYGIQPSINDLDQLLYVLCKRKHVREAQTFFDKIKHELSPTVKTYSILVRGWGFIGESSEAQKVFDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_022372
TK1151 IDTkA05G463680
OH-1004 IDLXL04_022372
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_022372
LocationChr04:149296563-149298194 (-)
DescriptionSimilar to At1g52640: Pentatricopeptide repeat-containing protein At1g52640, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g52640 Pentatricopeptide repeat-containing protein At1g52640, mitochondrial. No verified direct reference in this release
At1g77360 Pentatricopeptide repeat-containing protein At1g77360, mitochondrial. No verified direct reference in this release
At3g49730 Pentatricopeptide repeat-containing protein At3g49730. No verified direct reference in this release
At1g20300 Pentatricopeptide repeat-containing protein At1g20300, mitochondrial. No verified direct reference in this release
At1g71060 Pentatricopeptide repeat-containing protein At1g71060, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022372 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G20300
ath:AT1G52640
ath:AT1G77360
ath:AT3G49730
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.724
Rank 1 · LXL04_022372 · OH-1004
Plastid0.147
Rank 2 · LXL04_022372 · OH-1004
Nucleus0.076
Rank 3 · LXL04_022372 · OH-1004
Cytoplasm0.029
Rank 4 · LXL04_022372 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_022372 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N137-259 aa
PF13812.13PPR_3189-242 aa
PF13041.13PPR_2207-244 aa
PF12854.14PPR_1231-261 aa
PF01535.27PPR237-266 aa
PF13041.13PPR_2249-282 aa
PF17177.11PPR_long253-330 aa
PF23276.3TPR_24254-333 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_022372PF29070.1MSC6_N1372593.8e-2589.5
LXL04_022372PF13812.13PPR_31892425.9e-40135.9
LXL04_022372PF13041.13PPR_22072441.5e-81269.0
LXL04_022372PF12854.14PPR_12312612.6e-66219.7
LXL04_022372PF01535.27PPR2372666.8e-51167.7
LXL04_022372PF13041.13PPR_22492821.5e-81269.0
LXL04_022372PF17177.11PPR_long2533308.1e-2484.9
LXL04_022372PF23276.3TPR_242543335.4e-2278.9
LXL04_022372PF13812.13PPR_32563135.9e-40135.9
LXL04_022372PF12854.14PPR_12642972.6e-66219.7
LXL04_022372PF13041.13PPR_22693171.5e-81269.0
LXL04_022372PF01535.27PPR2723016.8e-51167.7
LXL04_022372PF13812.13PPR_32913485.9e-40135.9
LXL04_022372PF12854.14PPR_12993292.6e-66219.7
LXL04_022372PF23276.3TPR_243083875.4e-2278.9
LXL04_022372PF13041.13PPR_23113521.5e-81269.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SSR6Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g52640, mitochondrial60.259%Swiss-Protstrong database homology
Q9FVX2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g77360, mitochondrial32.080%Swiss-Protmoderate database homology
P0C8A0Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g4973029.478%Swiss-Protweak database homology
Q9LN22Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g20300, mitochondrial31.604%Swiss-Protmoderate database homology
Q9C9A2Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g71060, mitochondrial30.064%Swiss-Protmoderate database homology

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